Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e05
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X76114-1|CAA53720.1|  290|Caenorhabditis elegans Oxoglutarate/ma...    31   1.3  
U23525-8|AAC46570.1|  290|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z99266-1|CAB16464.1|  292|Caenorhabditis elegans F15C11.2 protein.     30   2.3  
Z98262-3|CAD44156.1|  454|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z98262-1|CAB10932.1|  502|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z71260-4|CAD44116.1|  454|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z71260-2|CAA95799.1|  502|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical...    29   3.1  
U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U97408-3|AAB93343.1|  339|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AF025460-2|AAF02169.3|  545|Caenorhabditis elegans Prion-like-(q...    28   9.4  
AF016415-5|AAW88414.1|  305|Caenorhabditis elegans Serpentine re...    28   9.4  

>X76114-1|CAA53720.1|  290|Caenorhabditis elegans
           Oxoglutarate/malate carrier protein protein.
          Length = 290

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 607 EKEQKLPDEALRGYHHALDELYRSNR-TGFLGQF 705
           + + KLP E  R Y HALD L R  R  GF+  F
Sbjct: 128 QNDSKLPLEQRRNYKHALDGLVRITREEGFMKMF 161


>U23525-8|AAC46570.1|  290|Caenorhabditis elegans Hypothetical
           protein K11G12.5 protein.
          Length = 290

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 607 EKEQKLPDEALRGYHHALDELYRSNR-TGFLGQF 705
           + + KLP E  R Y HALD L R  R  GF+  F
Sbjct: 128 QNDSKLPLEQRRNYKHALDGLVRITREEGFMKMF 161


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
           protein W05F2.7 protein.
          Length = 1424

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 329 PSSDPRAKP-TPSSMPATMPWTVAE*PSGAT*AAYPTIVA*QRAYVGPCIIPS 484
           PSS P   P TP+  PA +P T +      T  A P +V     ++ P +IPS
Sbjct: 747 PSSAPSIVPSTPTISPAPLPTTGSSGGPDVTTPAPPVMVTGPLIFIIPTVIPS 799


>Z99266-1|CAB16464.1|  292|Caenorhabditis elegans F15C11.2 protein.
          Length = 292

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 287 RNEYRPPIEPYSCPP--SSDPRAKPTPSSMP 373
           RN+ RP   P +  P  SS P + PTPSS P
Sbjct: 79  RNQARPTPAPAAATPTASSAPSSNPTPSSQP 109


>Z98262-3|CAD44156.1|  454|Caenorhabditis elegans Hypothetical
           protein F15C11.2c protein.
          Length = 454

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 287 RNEYRPPIEPYSCPP--SSDPRAKPTPSSMP 373
           RN+ RP   P +  P  SS P + PTPSS P
Sbjct: 79  RNQARPTPAPAAATPTASSAPSSNPTPSSQP 109


>Z98262-1|CAB10932.1|  502|Caenorhabditis elegans Hypothetical
           protein F15C11.2a protein.
          Length = 502

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 287 RNEYRPPIEPYSCPP--SSDPRAKPTPSSMP 373
           RN+ RP   P +  P  SS P + PTPSS P
Sbjct: 79  RNQARPTPAPAAATPTASSAPSSNPTPSSQP 109


>Z71260-4|CAD44116.1|  454|Caenorhabditis elegans Hypothetical
           protein F15C11.2c protein.
          Length = 454

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 287 RNEYRPPIEPYSCPP--SSDPRAKPTPSSMP 373
           RN+ RP   P +  P  SS P + PTPSS P
Sbjct: 79  RNQARPTPAPAAATPTASSAPSSNPTPSSQP 109


>Z71260-2|CAA95799.1|  502|Caenorhabditis elegans Hypothetical
           protein F15C11.2a protein.
          Length = 502

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 287 RNEYRPPIEPYSCPP--SSDPRAKPTPSSMP 373
           RN+ RP   P +  P  SS P + PTPSS P
Sbjct: 79  RNQARPTPAPAAATPTASSAPSSNPTPSSQP 109


>AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical
           protein Y18D10A.23 protein.
          Length = 503

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 757 QYGEHYEHNHLRYPQYRT*CR 819
           Q GE++E   +R+P+YRT CR
Sbjct: 89  QLGENWEMMQIRWPKYRTHCR 109


>U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical
           protein T13C5.2 protein.
          Length = 434

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 CPPSSDPRAKPTPSSMPATMPWTVA 397
           CPP + PR     SS+PA  P T+A
Sbjct: 376 CPPGTTPRVNLFGSSIPAPTPATLA 400


>U97408-3|AAB93343.1|  339|Caenorhabditis elegans Hypothetical
           protein F48A9.1 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 162 QRTESPSAYHHRHS--SNRNQPDRIPRTLRRAGRPRSPPIR*TLGTNI 299
           ++ ++   YHHR S  SNR+      R+LR   R  SP  R + GT++
Sbjct: 237 EQNQNRERYHHRRSKSSNRDDASVSHRSLRH--RSMSPASRRSFGTSL 282


>AF025460-2|AAF02169.3|  545|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 41
           protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 296 YRPPIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE 400
           + PP    S P    PR   TP + PAT P T ++
Sbjct: 92  HAPPPPASSAPIVGAPRQGATPQAAPATTPATTSQ 126


>AF016415-5|AAW88414.1|  305|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 30 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 801 LRIPKVIVFIVFAVLAGTFDSFIIYYMFWFLEELAEET 688
           L+IP   +F+ FAV  G F++ ++Y    F E+L   T
Sbjct: 130 LKIPNFCIFL-FAVAYGLFENVVLYGFCGFDEDLIPAT 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,935,236
Number of Sequences: 27780
Number of extensions: 408776
Number of successful extensions: 1492
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)