Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15e03
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 42 8e-05
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 29 1.0
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 28 1.4
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.8
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 4.1
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 26 5.5
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 9.6
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 9.6
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 9.6
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.6
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 9.6
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 9.6
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 25 9.6
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 42.3 bits (95), Expect = 8e-05
Identities = 25/108 (23%), Positives = 52/108 (48%)
Frame = -1
Query: 785 KFEGARIVCSARGSDFTEFRTQFSDDERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVI 606
K +G + A G+D EF +F ++ FG+LR++ D + KF+ + W G +
Sbjct: 37 KGQGNILKVVASGNDNDEFLDEFDENAVLFGFLRVK--DVNTGLNKFVLVCWCGE--AAA 92
Query: 605 NRAKMSTDKAIIKDIISNFAVELQLENQSEIDIDQFKDALNRAGGANY 462
+ S A + +++ + V++ S++++D + A G+ Y
Sbjct: 93 RKGLFSIHMATVSNLLKGYHVQITGRESSDLNMDDIIRRVADASGSKY 140
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.7 bits (61), Expect = 1.0
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -1
Query: 242 FLLSCVKLITFLITYRNSLF-IFQKYTCYIIFFSVVLIRIYQIKSR*SVVHFSKRGERIY 66
F S K ++++ N F I+ + +I+FF+V L Y S + S R RI+
Sbjct: 190 FYTSKRKCFRSILSWHNETFNIWTHLSAFIVFFAV-LAYFYPSSSSWVSSNVSNRIVRIF 248
Query: 65 FLLKIFKNL 39
FLL K L
Sbjct: 249 FLLSAMKCL 257
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 550 KFDMMSLMIALSVDILARLITDTFGPTHVMNINFLRLDI 666
K + +++ +SVDI ARL+T GP V+ N R+DI
Sbjct: 7 KDETLTIPEGVSVDIKARLVT-VKGPRGVLKQNLRRVDI 44
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 553 FDMMSLMIALSVDILARLITDTFGPTHVMNINFLRLDISSPICNLRYPNARSSSENCVRN 732
F ++S+ A+S ++ TF P+ ++IN+ L P R + SSS + +
Sbjct: 6 FLLISIFTAISYLVVDGATPRTFAPSASVSINYGTLSTVFPSLYRRASTSSSSSSSSIST 65
Query: 733 SVKSLP 750
S S P
Sbjct: 66 SHDSQP 71
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 609 HRHVRSYPRHEHKFLAFRHLVSHLQPEVSEC 701
H +RS+ + KFL HL+ HL S C
Sbjct: 23 HFWLRSFMSNNRKFLVHIHLIPHLNSLYSIC 53
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 5.5
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = -1
Query: 755 ARGSDFTEFRTQFSDDERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKA 576
+R F FR +D +R +LRL SKR K + W NVS+++ ++ K
Sbjct: 212 SRFQTFETFRKPLAD-KRRIEFLRL------SKRMKKLEELWTSENVSMLDALLLNKAKR 264
Query: 575 IIKDII 558
+ + I+
Sbjct: 265 LEQSIV 270
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.4 bits (53), Expect = 9.6
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -1
Query: 290 GPWLGHFCSRAIIH*SFLLSCVKLITFLITY-RNSLFIFQKYTCYII 153
G W F I+H FLL+ TY RNS+F+ CY I
Sbjct: 1268 GIWRRTFTGLYIVHLLFLLTIFYPCPIAYTYVRNSIFLILS-ICYTI 1313
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.4 bits (53), Expect = 9.6
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +3
Query: 594 LGSVDHRHVRSYPRHEHKFLAFRHLVSHLQPEVSECAFIIRELRAELREVATPGRAHYPG 773
LG+ DH ++SY + + + H + E+ E AF + +A++R+ R + PG
Sbjct: 658 LGTSDHDDMKSYFSDLDRHMKYFHAMQEKDAELIEMAF--AKKKADVRKEWL--RTYRPG 713
Query: 774 AFKLGTPP 797
+ T P
Sbjct: 714 IYMDYTQP 721
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 724 RSSLMMNAHSDTSGCRWETR 665
+S + + D SGC WETR
Sbjct: 141 KSQICTDIIDDASGCAWETR 160
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 105 LSTFYLVNPY*NYTEEYYITCVFLKN 182
LS F+L + Y ++ + +Y+ C +KN
Sbjct: 181 LSNFFLQDAYISFFQAFYVRCDSVKN 206
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 9.6
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 639 EHKFLAFRHLVSHLQPEVSECAFIIRELRAELREVATPGR---AHYPGAFKL 785
EH F+AF+ VS+L + +E + +E R TP R AH P F L
Sbjct: 59 EHLFVAFKCAVSNLAKQWAELSTTDKE--KTRRMFCTPSRLNTAHRPEVFYL 108
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 524 QSEIDIDQFKDALNRAGGANYGTG 453
+S++D+ FK+ LNR GA G
Sbjct: 591 RSDVDMTHFKNILNRGNGAGIVLG 614
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 9.6
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 595 LARLITDTFGPTHVMNINFLRLDISSPICNLRYPNARSSSENCVRNSVKSLPLAEHTI 768
LAR I D P ++ N L LD+ S + ++ R E +++ +K + +E I
Sbjct: 222 LARRIIDDDVPANLSNCKLLSLDVGSLVAGSKF---RGEFEERIKSVLKEVEESETPI 276
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -1
Query: 767 IVCSARGSDFTEFRTQFSDDERAFGYLRLQMGDEMSKRKKFMFM 636
++ S+ G D+ + R S + A+G + D++SK K+FMF+
Sbjct: 904 VIWSSGGVDY-DLRPHHSVPDTAYGMAK----DKLSKPKRFMFL 942
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,466
Number of Sequences: 5004
Number of extensions: 73267
Number of successful extensions: 205
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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