Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15e02
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1007 - 21670780-21671368,21671477-21671685 33 0.30
06_03_1082 - 27461095-27461727,27463596-27464603 31 1.6
11_06_0260 - 21761145-21762416 30 2.8
11_04_0254 - 15377689-15378357,15378807-15379241,15380326-153803... 30 2.8
06_03_0898 + 25772496-25773501,25774540-25775150 29 6.4
05_01_0008 + 60498-60552,60644-60864,60956-61013,61271-61443,615... 29 6.4
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 29 6.4
>04_03_1007 - 21670780-21671368,21671477-21671685
Length = 265
Score = 33.1 bits (72), Expect = 0.30
Identities = 28/100 (28%), Positives = 49/100 (49%)
Frame = -3
Query: 775 YKAEIQDRKHELLSNEEEYLKILNIVDQVLNQIEEQLKLQPVGNWLCCENFSIADINLAV 596
Y+ E + + +++ EE L ++L+ +E QL G +L + FS AD
Sbjct: 148 YETEDKLKDPDIMKQSEEELS------KLLDDVEAQLNN---GKYLAGDEFSPADSVFIP 198
Query: 595 LLQRLWELGLETRFWSNGKRPLIESYFERVRQRESFKNTI 476
+L R+ L L+ + + RP + Y+ V+QR S+K I
Sbjct: 199 ILARITLLDLDEEYINC--RPRLLEYYTLVKQRPSYKVAI 236
>06_03_1082 - 27461095-27461727,27463596-27464603
Length = 546
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Frame = -3
Query: 685 NQIEEQLKLQPVGNWL----CCENFSIADINL---AVLLQRLWELGLETRFWSNGK 539
N I+E L+L PV L C E+ I N+ +++L +W +G + R+W + +
Sbjct: 394 NIIKETLRLHPVAPLLMPKECQESCKILGYNIPKGSIMLVNVWAIGRDHRYWDDAE 449
>11_06_0260 - 21761145-21762416
Length = 423
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -3
Query: 784 ILLYKAEIQDRKHELLSNEEEYLKILNIVDQVLNQIEEQLKLQPVGNWLCCENFSIADIN 605
+LLYK + D+K + + + ++Y+ L + +E L+P +L +++ IN
Sbjct: 321 MLLYKVDFDDQKLDKIDSLKDYVLFLGFNSSICLSAKEFPNLRPGCAYLADDSYEEIGIN 380
Query: 604 LAVLLQ-RLWELGLET 560
L + +W ET
Sbjct: 381 KHTLREVGIWNFKSET 396
>11_04_0254 -
15377689-15378357,15378807-15379241,15380326-15380370,
15380675-15381145
Length = 539
Score = 29.9 bits (64), Expect = 2.8
Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Frame = -3
Query: 865 REILKTGDLSSSQNLRKLADENPKAKHILLYKAEIQDRKHELLSNEEEYLKILNIVDQVL 686
+++ G SS++ + E + H+L ++QD + N + + + + +
Sbjct: 331 QDVFIAGTQSSARVIEFTFAELMRKPHML---KKVQDEVRACIPNGQAIVSEVQVNNMTY 387
Query: 685 NQ--IEEQLKLQPVGNWLCCENFSIADINL--------AVLLQRLWELGLETRFWSNGKR 536
+ ++E L+L PV L + S+AD N+ +L W +G + RFW + ++
Sbjct: 388 LRAVVKEVLRLHPVAP-LLATHVSMADCNINGYMIPSGMRVLVNAWAIGRDERFWYDPEK 446
Query: 535 PLIESYFERV 506
+ E + E V
Sbjct: 447 FMPERFVESV 456
>06_03_0898 + 25772496-25773501,25774540-25775150
Length = 538
Score = 28.7 bits (61), Expect = 6.4
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Frame = -3
Query: 847 GDLSSSQNLRKLADENPKAKHILLYKAEIQDRKHELLSNEEEYLKILNIVDQVLNQIEEQ 668
G S+S L E + H++ KA+ + R H L L + N I+E
Sbjct: 337 GSESTSTTLEWALSELVRNPHVM-QKAQAEIR-HALQGRTRVTEDDLINLKYPKNIIKET 394
Query: 667 LKLQPVGNWL----CCENFSIADINL---AVLLQRLWELGLETRFWSNGKRPLIESYFER 509
L+L PV L C E+ I ++ ++ W +G + R+W N + FE+
Sbjct: 395 LRLHPVAPLLVPKECQESCKILGYDVPKGTIMFVNAWAIGRDPRYW-NDAEVFMPERFEK 453
Query: 508 V 506
V
Sbjct: 454 V 454
>05_01_0008 +
60498-60552,60644-60864,60956-61013,61271-61443,
61528-61711,61823-61993,62483-62514,62596-62638,
62768-62835,63561-63605,63695-64162
Length = 505
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = -3
Query: 868 VREILKTGDLSSSQNLR-KLADENPKA-KHILLYKAEIQDRKHELLSNEEEYLKILNIVD 695
+R+++ GD + + ++ K+ +E +A K + I ELL++++E KIL +
Sbjct: 180 IRKVVAEGDENEGRQIKSKIDEETAEAVKASASAVSAIAKTNQELLASKDEEKKILVTLT 239
Query: 694 QVLNQIEEQLK 662
Q L+ ++LK
Sbjct: 240 QALDSQAKELK 250
>01_06_1713 -
39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = -3
Query: 856 LKTGDLSSSQNLRKLADENPKAKHILLYKAEIQDRKHELLSNEEEYLKILNIVDQVLNQI 677
LK+ DLS QN + + + + + + E+Q+ K EL + + +Y K ++ V ++ I
Sbjct: 715 LKSYDLSLFQNRVEQNEHHKLGELVKKLEQELQESKQELKAKQAQYEKSVSTVSELEKTI 774
Query: 676 E 674
+
Sbjct: 775 K 775
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,266,050
Number of Sequences: 37544
Number of extensions: 354406
Number of successful extensions: 959
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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