Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e02
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40942-6|AAP68937.1|  709|Caenorhabditis elegans High temperatur...    30   1.9  
U40942-5|AAC47068.1|  729|Caenorhabditis elegans High temperatur...    30   1.9  
AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.      30   1.9  
Z92830-7|CAB07360.1|  659|Caenorhabditis elegans Hypothetical pr...    29   5.7  
U97003-1|AAB52270.2|  527|Caenorhabditis elegans Udp-glucuronosy...    29   5.7  
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical pr...    28   7.5  
L15188-3|AAA27948.2|  348|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    28   10.0 
AF016450-11|AAB65981.1|  317|Caenorhabditis elegans Hypothetical...    28   10.0 

>U40942-6|AAP68937.1|  709|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform b
           protein.
          Length = 709

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
 Frame = -3

Query: 835 SSQNLRKLADENPKAKHILLYKA--EIQ-DRKHELLSNEEEYLKILNIVDQVLNQIEEQL 665
           S +++RKL DE+PK    L+YK   ++Q  R H    ++++ +  + ++ +++  + E  
Sbjct: 46  SGEDIRKLRDESPKNLATLVYKTVEKLQFSRNHPATIDQKKTINAIRLLTRIVPYLLEDA 105

Query: 664 KLQPVGNWLCCENFSIADINLAVLLQRLWEL 572
           + +    W    +   A    AVLL+ L +L
Sbjct: 106 EWRGY-FWSPIPHGDAAKPLAAVLLETLSDL 135


>U40942-5|AAC47068.1|  729|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform a
           protein.
          Length = 729

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
 Frame = -3

Query: 835 SSQNLRKLADENPKAKHILLYKA--EIQ-DRKHELLSNEEEYLKILNIVDQVLNQIEEQL 665
           S +++RKL DE+PK    L+YK   ++Q  R H    ++++ +  + ++ +++  + E  
Sbjct: 46  SGEDIRKLRDESPKNLATLVYKTVEKLQFSRNHPATIDQKKTINAIRLLTRIVPYLLEDA 105

Query: 664 KLQPVGNWLCCENFSIADINLAVLLQRLWEL 572
           + +    W    +   A    AVLL+ L +L
Sbjct: 106 EWRGY-FWSPIPHGDAAKPLAAVLLETLSDL 135


>AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.
          Length = 729

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
 Frame = -3

Query: 835 SSQNLRKLADENPKAKHILLYKA--EIQ-DRKHELLSNEEEYLKILNIVDQVLNQIEEQL 665
           S +++RKL DE+PK    L+YK   ++Q  R H    ++++ +  + ++ +++  + E  
Sbjct: 46  SGEDIRKLRDESPKNLATLVYKTVEKLQFSRNHPATIDQKKTINAIRLLTRIVPYLLEDA 105

Query: 664 KLQPVGNWLCCENFSIADINLAVLLQRLWEL 572
           + +    W    +   A    AVLL+ L +L
Sbjct: 106 EWRGY-FWSPIPHGDAAKPLAAVLLETLSDL 135


>Z92830-7|CAB07360.1|  659|Caenorhabditis elegans Hypothetical
           protein F11A5.8 protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 832 SQNLRKLADENPKAKHILLYKAEIQDRKHELLSNEEEYLKILNIVDQVLN 683
           SQN+RK+ DEN K   +L +    + RK + L N E  ++ L     + N
Sbjct: 377 SQNIRKIVDENSK---LLPFILAYEPRKEQCLENLEADVQDLRKTGLIFN 423


>U97003-1|AAB52270.2|  527|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein32 protein.
          Length = 527

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 766 EIQDRKHELLSNEEEYLKILNIVDQVLNQ 680
           +I+D  HE+L NE+ +L    + D V NQ
Sbjct: 425 KIRDAFHEILHNEKYHLNARKVADMVRNQ 453


>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
           protein F59A6.5 protein.
          Length = 1286

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 838 SSSQNLRKLADE-NPKAKHILLYKAEIQDRKHELLSNEEEYLKILNIVDQVLNQIEEQLK 662
           SS   L  L  E + KA  I +   ++ D+  EL S   EY+  L+  ++    +EE+L+
Sbjct: 153 SSRSRLHVLEKELSAKANDIFMVTKDLHDKNEELTSFRMEYVTKLSEANREKKALEEKLE 212


>Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical
           protein C05G5.1 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 255 VNFDNNQSYSIFIAISKANKNHNMNLNSDKYYEIIFL 365
           +NF N  ++  + AI+    N+  N N+  ++ +IF+
Sbjct: 26  INFSNGNTWITYAAITFYTNNYYSNSNAALFFNVIFM 62


>L15188-3|AAA27948.2|  348|Caenorhabditis elegans Hypothetical
           protein C14B9.3 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 519 ILNEYDKENHSKILFQICHSTLK**LRLHLQFMLVLQVLFHL 394
           ++ +Y + + S I F ICHS +     L   F+++    FHL
Sbjct: 255 LMPQYMQYHQSSITFPICHSYMPQLFALMEYFIIIAYATFHL 296


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1556

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 84   CCRSWTSAMPGAQSSHCPP 140
            CC+S T A+P + +  CPP
Sbjct: 993  CCKSGTGALPPSVTDGCPP 1011


>AF016450-11|AAB65981.1|  317|Caenorhabditis elegans Hypothetical
           protein B0238.11 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 538 RPLIESYFERVRQRESFKNTIPNL 467
           RPLIES+ E + QR+S  +T+ N+
Sbjct: 76  RPLIESFLEFLVQRQSETSTVHNM 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,776,840
Number of Sequences: 27780
Number of extensions: 353706
Number of successful extensions: 1084
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)