Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e01
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    33   0.050
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    28   1.4  
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    27   3.3  
SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyce...    26   5.8  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    26   5.8  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    26   5.8  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   7.6  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 33.1 bits (72), Expect = 0.050
 Identities = 32/149 (21%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
 Frame = -2

Query: 837  INQRKMSVSNTPIDVKLQILATELQNRLEETGKVHEVIEIGYSLDDVQPKKKTKYQKSEL 658
            +N  +++  +  +D  +++  ++LQN ++   K  E+I     L  ++ KK  +  +S  
Sbjct: 1141 LNFAEITSPSPDLDSVMKLGLSDLQNHVKRISKEMEIISCQRQLLFLENKKLKRTVESSN 1200

Query: 657  RLIESLE-GVCDRILEYNIHK--ERSDSTRFAKGMSQTFKTLHGLVDKGVKV--DLGIPL 493
            R+I  L+ G+ ++ +        ERS+       ++++ K+L   +++  +V  +L   +
Sbjct: 1201 RVIADLQRGITEKDVSSTSESVGERSNYLNMVALLNESNKSLRENLERNEEVITELREKI 1260

Query: 492  ELWDKPSAEITHMKTQCESLLEENEIAVE 406
            E      A     K Q ES L+  + AV+
Sbjct: 1261 ETLKTDLANFRLNKEQLESQLQTEKAAVK 1289


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/52 (38%), Positives = 31/52 (59%)
 Frame = -2

Query: 765 QNRLEETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESLEGVCDRILEY 610
           Q+ +E+ G + EVI    S+  ++ K KT  +K ELR   +L  V DR+L+Y
Sbjct: 90  QDLVEQQG-LDEVITKVLSIPRLKLKYKTIREKCELRDSHNLFLVDDRVLKY 140


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 19/81 (23%), Positives = 35/81 (43%)
 Frame = +3

Query: 372 DLLYLDGSNTSLRRLFRSLLKGFHIVFSYG*FQQKVYPTAPMVFRDPLLHLYLRDREGS* 551
           DL+   G N  ++ L RSL +G           + +     +V R+P + L ++D+E S 
Sbjct: 174 DLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFI-LAVKDKEASG 232

Query: 552 MFDSFLWQILYYRTFLCEYCI 614
               ++ +      FL  Y +
Sbjct: 233 KLTQYVVKCSEQDKFLLAYIL 253


>SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 187

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -2

Query: 396 WNHQGKEDLKIYLCTKHALKGVDDSCLYEELNNEKGEKGIKERSEL*DLFNRHK 235
           W +Q   +  +YL  KH  K  D S    E+  E  EK +    +L    NR +
Sbjct: 99  WEYQKSRNDNLYLLEKHGEKAFDSSLEALEVQLELLEKELVNTKKLSQGCNRKR 152


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 777 ATELQNRLEETGKVHEVIEIGYSLDDVQPKK-KTKYQKSELRLIESLEGVCD 625
           AT LQN+  + G V    E   S  D+Q K+ K+  + + L  I S  G+ D
Sbjct: 364 ATSLQNKSTDYGSVKRKTENLNSDSDIQNKRTKSIEENNSLPPIVSTNGITD 415


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 389 WFQYQSSTAISFSSKRLSHCVFIWVISAEGLSHSSNGIPRSTFT 520
           WF+       S++  +    +F W    EGL +S +G+P   F+
Sbjct: 105 WFEVHIRLPKSWA--KYEQVIFQWNCDNEGLVYSQDGVPLQAFS 146


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 756 LEETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESLEGV 631
           L E  K +  + + Y+     PKKK +  K E  L+ ++EG+
Sbjct: 115 LSERAKQYGRLGVDYAQVGDAPKKKIREMKLENGLLRNVEGI 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,594
Number of Sequences: 5004
Number of extensions: 61960
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)