Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e01
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0124 + 901034-901153,901455-901481,901713-901792,903739-90...    37   0.017
02_01_0628 + 4717963-4718175,4718719-4718857,4719514-4719740,471...    34   0.16 
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232...    31   1.5  
02_05_1293 - 35520733-35520963,35521696-35521878,35522040-355222...    29   3.5  
01_06_1763 + 39723596-39723691,39724030-39724672,39724773-397252...    29   3.5  
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    29   4.6  

>02_01_0124 +
           901034-901153,901455-901481,901713-901792,903739-903811,
           904015-904072,904561-904615,905140-905164,905361-905421,
           907416-907531,907661-907812,907918-908003,908182-908309,
           908451-908501,908774-908860,908964-909033,909351-909407,
           909729-909865,910313-910390,910971-911057
          Length = 515

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -2

Query: 687 KKTKYQKSELRLIESLEGVCDRILEYNIHKERSDSTRFAKGMS-QTFKT 544
           K   Y+ SELR++E L+G+CD++ +Y + K  S    + K     +FKT
Sbjct: 71  KVIDYRVSELRVVELLDGLCDKMQDYTLQKLESGEKGWVKVADWNSFKT 119


>02_01_0628 +
           4717963-4718175,4718719-4718857,4719514-4719740,
           4719825-4719998,4720090-4720176
          Length = 279

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = -2

Query: 435 LLEENEIAVEDWYWNHQGKEDLKIYLCTKHALKGVDDSCLYEELNNEKGEKGIKERSEL* 256
           +L EN  A E++  NH G E +++++    +   +DD+        E  EK I ER+   
Sbjct: 127 VLTENPHATENFQTNHHGSEWVELFVREMMSASDIDDARARASRALEALEKSIMERAGTE 186

Query: 255 DLFNRHK 235
            + N HK
Sbjct: 187 AVHNLHK 193


>04_04_1441 -
           33621423-33622118,33622251-33622315,33623140-33623227,
           33623957-33625570
          Length = 820

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 726 IEIGYSLDDVQPKKKTKYQKSELRLIE-SLEGVCDRILEYNIHKERSDSTRFAK 568
           +E G  LD+V+ +KK K +  +  L+E   EG  D   E  + KE+ +  +  K
Sbjct: 314 VENGMDLDEVKVEKKKKKKAKKASLVEGETEGAKDSKQEKKVKKEKKEKKKKKK 367


>02_05_1293 -
           35520733-35520963,35521696-35521878,35522040-35522255,
           35522936-35523022,35523125-35523331,35523426-35523650,
           35523743-35523798,35524009-35524115,35524443-35525470
          Length = 779

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 335 PFKACFVHKYILRSSLP*WFQYQSSTAISFSSKRLSHCVF 454
           P  A F  +   +++ P W+Q+ SS+AI   +K  S C F
Sbjct: 136 PRLAAFNPRRDFQTAAPWWWQWSSSSAIPSRTKEASFCFF 175


>01_06_1763 +
           39723596-39723691,39724030-39724672,39724773-39725275,
           39725786-39725905,39726356-39726421,39727146-39727256,
           39727650-39727726,39727996-39728063,39728384-39728497,
           39728593-39728774,39728926-39728994,39729294-39729449,
           39729657-39729734
          Length = 760

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
 Frame = -2

Query: 789 LQILATELQNRLEETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESLEGVCDRILEY 610
           L+ + TE  N   E     E  ++  +   +   K  + + SEL+L + +EG+   I  Y
Sbjct: 479 LESVRTEYANAQLECNAADERAKVLAAEVILLEDKALRLRSSELKLEKEIEGLSSEISSY 538

Query: 609 -----NIHKERSDSTRFAKGMSQTFKTLHGLVDKGVKVDLGIPLELWDKPSAEITHMKTQ 445
                ++ KER       + + +  K LH    K     +   + + +KPSA+     T 
Sbjct: 539 RRKVSSLEKERQHLQSTVEALQEEKKLLH---SKLRNTSVTEKVNIIEKPSADKRDASTA 595

Query: 444 CESL 433
            E L
Sbjct: 596 TEDL 599


>10_06_0105 -
           10790092-10790323,10791092-10791234,10791322-10791429,
           10791796-10791903,10793133-10797686,10798347-10798461,
           10799597-10799724,10799843-10800043,10800158-10800227,
           10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 558 QTFKTLHGLVDKGVKVDLGIPLELWDKPSAEITHMKTQCESLLEE 424
           Q F    G   +G+   LG+ L   ++ SAE++ ++T+C +L  E
Sbjct: 380 QDFTDKLGTETQGLAQQLGVELMSRNQLSAEVSSLRTECSNLKRE 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,264,819
Number of Sequences: 37544
Number of extensions: 320523
Number of successful extensions: 856
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)