Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e01
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70205-9|CAA94121.1|  191|Caenorhabditis elegans Hypothetical pr...   114   8e-26
AL031265-1|CAA20327.1|  191|Caenorhabditis elegans Hypothetical ...   114   8e-26
Z73896-7|CAO82025.1|  310|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z73896-6|CAA98055.1|  356|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF039051-8|AAB94268.3|  309|Caenorhabditis elegans Serpentine re...    30   2.3  
U61947-5|AAB03134.1|  723|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z74027-4|CAA98423.1|  561|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z74027-3|CAA98422.1|  557|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z35639-5|CAA84699.2|  534|Caenorhabditis elegans Hypothetical pr...    29   5.4  
U23179-5|AAK68210.2|  347|Caenorhabditis elegans Serpentine rece...    28   7.2  
U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z68301-8|CAA92626.2|  484|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine rece...    28   9.5  
AF068718-4|AAC17765.1|   98|Caenorhabditis elegans Hypothetical ...    28   9.5  
AF016422-5|AAG24171.1|  291|Caenorhabditis elegans Serpentine re...    28   9.5  

>Z70205-9|CAA94121.1|  191|Caenorhabditis elegans Hypothetical
           protein C11H1.7 protein.
          Length = 191

 Score =  114 bits (274), Expect = 8e-26
 Identities = 51/128 (39%), Positives = 84/128 (65%)
 Frame = -2

Query: 675 YQKSELRLIESLEGVCDRILEYNIHKERSDSTRFAKGMSQTFKTLHGLVDKGVKVDLGIP 496
           +Q+      +  E +C+   E+ IHKE++   RF++  S+T +TL  + +KGVKV+LG+P
Sbjct: 63  FQRLSSEFADITENICNGFNEFKIHKEKTGLERFSRAQSKTIETLKQMREKGVKVELGMP 122

Query: 495 LELWDKPSAEITHMKTQCESLLEENEIAVEDWYWNHQGKEDLKIYLCTKHALKGVDDSCL 316
            E+WD+PSAEI  ++  CESLLE+ E  +E+W+ N    EDL   LC ++ALK  + SC 
Sbjct: 123 FEMWDQPSAEIFALRQGCESLLEDYEDLIEEWFINKASLEDLFKQLCARNALKNQETSC- 181

Query: 315 YEELNNEK 292
           ++ L++++
Sbjct: 182 FDHLDHKQ 189


>AL031265-1|CAA20327.1|  191|Caenorhabditis elegans Hypothetical
           protein C11H1.7 protein.
          Length = 191

 Score =  114 bits (274), Expect = 8e-26
 Identities = 51/128 (39%), Positives = 84/128 (65%)
 Frame = -2

Query: 675 YQKSELRLIESLEGVCDRILEYNIHKERSDSTRFAKGMSQTFKTLHGLVDKGVKVDLGIP 496
           +Q+      +  E +C+   E+ IHKE++   RF++  S+T +TL  + +KGVKV+LG+P
Sbjct: 63  FQRLSSEFADITENICNGFNEFKIHKEKTGLERFSRAQSKTIETLKQMREKGVKVELGMP 122

Query: 495 LELWDKPSAEITHMKTQCESLLEENEIAVEDWYWNHQGKEDLKIYLCTKHALKGVDDSCL 316
            E+WD+PSAEI  ++  CESLLE+ E  +E+W+ N    EDL   LC ++ALK  + SC 
Sbjct: 123 FEMWDQPSAEIFALRQGCESLLEDYEDLIEEWFINKASLEDLFKQLCARNALKNQETSC- 181

Query: 315 YEELNNEK 292
           ++ L++++
Sbjct: 182 FDHLDHKQ 189


>Z73896-7|CAO82025.1|  310|Caenorhabditis elegans Hypothetical
           protein F09E8.2b protein.
          Length = 310

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 696 QPKKKTKYQKSELRLIESLEGVCDR 622
           + K   KY+ SE RLIE LEGVC +
Sbjct: 57  EEKNLGKYKTSETRLIEVLEGVCKK 81


>Z73896-6|CAA98055.1|  356|Caenorhabditis elegans Hypothetical
           protein F09E8.2a protein.
          Length = 356

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 696 QPKKKTKYQKSELRLIESLEGVCDR 622
           + K   KY+ SE RLIE LEGVC +
Sbjct: 57  EEKNLGKYKTSETRLIEVLEGVCKK 81


>AF039051-8|AAB94268.3|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein7 protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = +3

Query: 570 WQILYYRTFLCEYCIPIFYHTHPLKIRLTLIQISDISFSFLVEHRRGSIRFQ*LHELCRS 749
           W + Y   ++     P FY   P  I L     S I  S+ +E R+  +  + L +    
Sbjct: 235 WSLFYVLPYIVPADKPTFYAAVPFFITLNGSSNSIIFLSYNIEIRK-YLNIKVLWQKLNG 293

Query: 750 LRVCSAIPLLEFAT 791
           + V S IP+L F T
Sbjct: 294 VSVSSNIPVLPFVT 307


>U61947-5|AAB03134.1|  723|Caenorhabditis elegans Hypothetical
           protein C06G3.4 protein.
          Length = 723

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
 Frame = -2

Query: 780 LATELQNRLEETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIES-LEGVCDRILEYNI 604
           +A  L+NR  + GK++EV++I    D      KT   +S+  +I S +EG+   +   NI
Sbjct: 74  IANCLKNRSFKLGKINEVLKILLDFDSF----KTPETESQSNMIGSYMEGLSKILKRLNI 129

Query: 603 H-----KERSDSTRFAKGMSQT 553
                 K  SD TR+    +Q+
Sbjct: 130 ARDDSLKSLSDETRYLNRFNQS 151


>Z74027-4|CAA98423.1|  561|Caenorhabditis elegans Hypothetical
           protein C13G3.3b protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -2

Query: 576 FAKGMSQTFKTLHGLVDKGVKVDLGIPLELWDKPSAEITHMKTQCESLLEENE 418
           F    S   KT+HGL+   +K+ + +  +L+D+ S      + Q ++L EE E
Sbjct: 400 FKNSKSHWNKTIHGLIYNALKMFMEMNQKLFDECSQAYQKDRVQEKTLNEEKE 452


>Z74027-3|CAA98422.1|  557|Caenorhabditis elegans Hypothetical
           protein C13G3.3a protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -2

Query: 576 FAKGMSQTFKTLHGLVDKGVKVDLGIPLELWDKPSAEITHMKTQCESLLEENE 418
           F    S   KT+HGL+   +K+ + +  +L+D+ S      + Q ++L EE E
Sbjct: 396 FKNSKSHWNKTIHGLIYNALKMFMEMNQKLFDECSQAYQKDRVQEKTLNEEKE 448


>Z35639-5|CAA84699.2|  534|Caenorhabditis elegans Hypothetical
           protein D2045.9 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 765 QNRLEETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESLEGVCDRI 619
           Q RL    K+ +++ I YSL +    +K      EL+  + LEG  D I
Sbjct: 301 QERLNRMQKIFDILGIEYSLLEATDGQKLDELPEELKNYQILEGYLDPI 349


>U23179-5|AAK68210.2|  347|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 2 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +3

Query: 501 FRDPLLHLYLRDREGS*MFDSFLWQILYYR--TFLCEYCIPIFYHTHPLKIRLTLIQISD 674
           F D  +   L     +  F+S+ W++LY     F+C  CI +  H+   K R  L Q   
Sbjct: 172 FEDSFISFALVPETSAIPFNSYFWELLYAEIGNFICN-CIFLLVHS-KFKARF-LHQQRS 228

Query: 675 ISFSFLVEHRRGSIRF 722
           +S  +L+E    + +F
Sbjct: 229 LSVRYLLEEISQTSKF 244


>U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical
           protein F23F12.3 protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 564 FLWQILYYRTFLCEYCIPIFYHTHP 638
           FLWQ   +  + C+   PIFY+ HP
Sbjct: 15  FLWQFGLF--YACQLIFPIFYNFHP 37


>Z68301-8|CAA92626.2|  484|Caenorhabditis elegans Hypothetical
           protein W01B6.3 protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 346 MFCT*IYFEIFFTLMVPIPVFDG 414
           + C  I+FE+FF   +P+P + G
Sbjct: 317 LLCGLIFFEVFFIFHMPLPFYPG 339


>U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 12 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 501 FRDPLLHLYLRDREGS*MFDSFLWQILYYR--TFLCEYCIPIFYH 629
           F  P ++  L     +  F+SFLW +LY +   F+C   I +F H
Sbjct: 168 FDKPFINFILVPATSALQFNSFLWYMLYLKITNFICN-LILLFIH 211


>AF068718-4|AAC17765.1|   98|Caenorhabditis elegans Hypothetical
           protein R01B10.3 protein.
          Length = 98

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 741 KVHEVIEIGYSLDDVQPKK-KTKYQKSELRLIESLEGVCDRILEYNI 604
           KV EV +IGYSLD++  K+ + K++ +    I    G+   +L  +I
Sbjct: 27  KVAEVPQIGYSLDELNAKREEPKWRVARYTAIAMFWGIWGALLAGSI 73


>AF016422-5|AAG24171.1|  291|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 58 protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 609 CIPIFYHTHPLKIRLTLIQISDISFSFLVEH 701
           C PI YH H  KI L +I I   +++ L ++
Sbjct: 111 CAPISYHNHRFKIPLAVIIILISAYTILEQY 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,410,193
Number of Sequences: 27780
Number of extensions: 327325
Number of successful extensions: 1010
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)