Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d24
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   234   1e-62

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  234 bits (573), Expect = 1e-62
 Identities = 120/228 (52%), Positives = 149/228 (65%), Gaps = 1/228 (0%)
 Frame = -1

Query: 838 FLILRGEETPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXX 659
           F    G   P+LYQHLF FFGHPEVYILI+P FG++SHII      K  F          
Sbjct: 226 FYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHIIPS-LAHKPIFGKEGMLWAML 284

Query: 658 XXXXXGFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP-N 482
                G +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   
Sbjct: 285 SIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVP 344

Query: 481 IL*RLGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*Y 302
           +L  +GF+ LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS               
Sbjct: 345 MLYAIGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WS 403

Query: 301 PLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 158
           P   GL  N  +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 404 PKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451



 Score = 29.5 bits (63), Expect = 0.63
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -3

Query: 851 LNTSFFDPAGGGDP 810
           LNTSF+ P GGGDP
Sbjct: 222 LNTSFYAPEGGGDP 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,375
Number of Sequences: 5004
Number of extensions: 44622
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)