Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d24
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical p...    29   5.5  
AF100675-1|AAC69003.2|  370|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical pr...    28   9.7  
Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical pr...    28   9.7  
AL021448-1|CAA16276.2|  898|Caenorhabditis elegans Hypothetical ...    28   9.7  
AF233290-1|AAF62516.1|  898|Caenorhabditis elegans maternal-effe...    28   9.7  

>AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical
           protein C46E10.2 protein.
          Length = 123

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 251 FYNIYWSKYNIFSTTF 204
           F+NIYWS Y IF  TF
Sbjct: 11  FFNIYWSFYAIFGFTF 26


>Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical
           protein T10C6.4 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 809 NFISTFILIFWTSXSLYFNFTRIWYNFSYYF 717
           N++ T+I+I WT   + +++   +YN S+ F
Sbjct: 111 NYVLTYIIINWTLPPVIYSYFFFFYNCSFPF 141


>AF100675-1|AAC69003.2|  370|Caenorhabditis elegans Hypothetical
           protein Y55H10A.2 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -3

Query: 782 FWTSXSLYFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVI 645
           F+++       ++   NF  Y  R R+ RN  LF+   C    W I
Sbjct: 251 FYSTPLYTMTLSKTMVNFMIYMIRYRELRNIILFKIIACLPQKWSI 296


>Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical
           protein T06G6.2 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 728 SYYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSYIH 612
           SYYF R    R  W  +NN+   S  +I + CL +S IH
Sbjct: 42  SYYFARLAI-RTLW--KNNIFSNSTRLILLVCLLNSIIH 77


>Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical
           protein C50B6.10 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 305 ISFIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIF 171
           + F+YR +  F + +   F+N  W  + IF    F   W+ S  F
Sbjct: 111 VQFVYRYWAIF-HVRRLSFFNGIWILFWIFLAMMFGVDWSCSVYF 154


>AL021448-1|CAA16276.2|  898|Caenorhabditis elegans Hypothetical
           protein Y2H9A.1 protein.
          Length = 898

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 818 GDPNFISTFILIFWTSXSLYFNFTRIWYNF 729
           GDP   +T IL  WT  S +   T  WY +
Sbjct: 355 GDPIPQNTLILAKWTDNSFWLALTLDWYKY 384


>AF233290-1|AAF62516.1|  898|Caenorhabditis elegans maternal-effect
           sterile 4 protein.
          Length = 898

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 818 GDPNFISTFILIFWTSXSLYFNFTRIWYNF 729
           GDP   +T IL  WT  S +   T  WY +
Sbjct: 355 GDPIPQNTLILAKWTDNSFWLALTLDWYKY 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,892,056
Number of Sequences: 27780
Number of extensions: 239957
Number of successful extensions: 530
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)