Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d23
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    29   0.85 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    29   1.1  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   4.5  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    26   6.0  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   6.0  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    26   7.9  

>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
 Frame = +3

Query: 201 NGAIQREAKRLIVKNKR-------FERSQVLAFVVEWIDENKELEWESTFSTSRQHESFR 359
           + ++ +   + +V NKR       F + + ++  V+++DE+  L      +   Q    R
Sbjct: 218 SASVSKSENKALVNNKRYSDSYFYFSKMRRISIDVDYVDEDLNL----INAYLSQFGKKR 273

Query: 360 HVTELFRHIKRYFSFVEHLHNFSHWHGVFFKYDKFIRI--ADNLVLTSGEFS 509
            + EL   + R FS   + H FS W  +F  +  FI     D  +L+  E S
Sbjct: 274 SLNELCALLSRRFS---NRHTFSEWRALFMHFFPFINSEGVDPAILSDRETS 322


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -2

Query: 758 FEFDASNSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDA 609
           F F+ S +V+ +  E    +V+++K+ QPR N    N  IE  +N   DA
Sbjct: 637 FSFETSPTVFQTSPEEDKENVNNIKISQPR-NSLQTNGYIEGMANNVLDA 685


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +1

Query: 127 GNRSPSW*MKISLKYMLG-TLNNASTTGRSRGKPRGLLSRTKDSKGAKSLPLLSNG*TKT 303
           GN  PS+  K S  Y  G   NN+       G PR   SR   +        +SNG +  
Sbjct: 308 GNSHPSY-NKYS-HYQHGFNYNNSGNNRNESGHPRFRNSRRNYNNQGAYPTYMSNGRSAN 365

Query: 304 KSWNGNPPSVPLGS 345
           +S   NP +V  GS
Sbjct: 366 QSPRNNPQNVNNGS 379


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -2

Query: 605 VKIFLAPKYDDNGIPLTLEDNWMKFF----ELDWFTTKLTAGQNKI 480
           ++IFL P    +G+    +D W+ F+    E DW       G N +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/70 (28%), Positives = 27/70 (38%)
 Frame = +1

Query: 190 NASTTGRSRGKPRGLLSRTKDSKGAKSLPLLSNG*TKTKSWNGNPPSVPLGSMSLLGM*Q 369
           +A TTG S GKP G  + T   KG  +      G +  K       + P    S      
Sbjct: 264 SAPTTGFSFGKPAGQAASTATDKGTTTTSSAGTGFSFGKPATTEDTNKPTAPNSAFTKPA 323

Query: 370 NSSDISKGTF 399
            S+  +K TF
Sbjct: 324 TSTGDNKPTF 333


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
 Frame = -2

Query: 749 DASNSVYFSKEEIKNNHVHDVKVRQPRLNHS-----------PFNVNIEVDSNVASDAVV 603
           D S+       ++ +N    +    PRLNHS           P + NI  D + + D + 
Sbjct: 266 DVSDEDLHPSSQLNDNEASSLFPDTPRLNHSLSFVSLVSSLPPLDQNIMQDYHTSKDILT 325

Query: 602 KIFLAPKY-DDNGIPLTLEDN 543
            IFL   + D + +   L D+
Sbjct: 326 SIFLDVNFADSSALEAKLSDS 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,495,375
Number of Sequences: 5004
Number of extensions: 75914
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)