Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d22
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047     32   0.65 
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983...    29   3.5  
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633...    29   6.1  
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059...    28   8.1  
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289...    28   8.1  

>01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047
          Length = 440

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = +3

Query: 324 TFSTSRQHESFRHVTELFRHIKRYFSFV-EHLHNFSHWHGVFFKYDKFIRIADNLVLTSG 500
           +FS  R     R ++  +  +     F+     +F HW     K +KF R  DNL+L   
Sbjct: 21  SFSRIRAIVRMRRLSRRWMRVIECLQFICLDYRDFKHW-----KVEKFARFVDNLLLIRS 75

Query: 501 EFSCEPVQLEEFHPVVL*C 557
           +      QL  FH + L C
Sbjct: 76  KVDLHTFQLYWFHYLPLNC 94


>01_06_0496 -
           29795490-29796638,29796811-29796870,29798168-29798371,
           29798739-29798984,29799375-29799464
          Length = 582

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 524 LDWFTTKLTAGQNKIIRNSNEFVIFKEDSVPMTEIMKM 411
           +D F T +T    KI RNS +F     DSVP +++ ++
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315


>03_02_0884 +
           12160453-12160518,12160598-12160696,12163223-12163357,
           12163841-12163891,12164070-12164693,12164779-12164952,
           12165047-12165272,12165368-12165459,12165551-12165649,
           12165743-12165791,12165878-12165931,12166235-12166290,
           12166367-12166438,12166520-12166615,12167069-12167418,
           12167508-12167679,12167777-12167875,12167959-12168090,
           12168185-12168288,12168369-12168401,12168744-12168930,
           12169016-12169024
          Length = 992

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 761 NFEFDASN--SVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVA 618
           N EF+  N  ++  S EEIK+ ++ ++  +  +  H P N   E + N A
Sbjct: 505 NEEFNPVNKSTILNSSEEIKHINIDEIMTKMNKTGHVPINPPDETEKNSA 554


>08_02_1240 +
           25504789-25504794,25505421-25505555,25505854-25505964,
           25506091-25506183,25506264-25506884,25506970-25507143,
           25507239-25507464,25507560-25507651,25507744-25507842,
           25507936-25507984,25508071-25508124,25508312-25508484,
           25508561-25508632,25508713-25508808,25509032-25509048,
           25509704-25509875,25509973-25510071,25510381-25510484,
           25510940-25511126,25511212-25511220
          Length = 862

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 761 NFEFDASN--SVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDA 609
           N EF+  N  ++  S EEIK+ ++ ++  +  +  H P N   E + N A  A
Sbjct: 502 NEEFNPVNKSTILNSSEEIKHINIDEIMTKLNKTGHVPINPPDETEKNSALTA 554


>08_02_0747 -
           20728073-20728081,20728167-20728353,20728810-20728913,
           20729008-20729139,20729583-20729810,20730263-20730358,
           20730440-20730511,20730588-20730760,20730947-20731000,
           20731086-20731134,20731228-20731326,20731420-20731511,
           20731607-20731832,20731927-20732100,20732186-20732809,
           20732890-20733033,20733108-20733218,20733516-20733650,
           20733963-20733989
          Length = 911

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 761 NFEFDASN--SVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDA 609
           N EF+  N  ++  S EEIK+ ++ ++  +  +  H P N   E + N A  A
Sbjct: 527 NEEFNPVNKSTILNSSEEIKHINIDEIMTKLNKTGHVPINPPDETEKNSALTA 579


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,113,534
Number of Sequences: 37544
Number of extensions: 451539
Number of successful extensions: 1040
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)