Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d20
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   3.4  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   3.4  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   3.4  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   3.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   4.6  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   4.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.6  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 464 YLFLYMYINYDSQFNYNLYYIQTI 535
           Y + Y   NY+ +  YN+ YI+ I
Sbjct: 95  YKYNYNNNNYNKKLYYNINYIEQI 118


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 464 YLFLYMYINYDSQFNYNLYYIQTI 535
           Y + Y   NY+ +  YN+ YI+ I
Sbjct: 95  YKYNYNNNNYNKKLYYNINYIEQI 118


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 464 YLFLYMYINYDSQFNYNLYYIQTI 535
           Y + Y   NY+ +  YN+ YI+ I
Sbjct: 95  YKYNYNNNNYNKKLYYNINYIEQI 118


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 464 YLFLYMYINYDSQFNYNLYYIQTI 535
           Y + Y   NY+ +  YN+ YI+ I
Sbjct: 95  YKYNYNNNNYNKKLYYNINYIEQI 118


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 482 YINYDSQFNYNLYYIQTI 535
           Y NY+ +  YN+ YI+ I
Sbjct: 101 YNNYNKKLYYNINYIEQI 118


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
 Frame = +2

Query: 476 YMYINYDSQFNYN--LYY 523
           Y Y NY++  NYN  LYY
Sbjct: 89  YKYSNYNNYNNYNKKLYY 106


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 496 LTIQLQLVLYTNNLIILKYKFQYISIKSLLL 588
           +T++ + + YT NLI+      Y+S+ +  L
Sbjct: 229 ITLRRKTLFYTVNLIVPCVSISYLSVLAFYL 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,827
Number of Sequences: 438
Number of extensions: 3680
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)