Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d19
         (243 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    45   2e-06
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    45   2e-06
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    23   4.3  
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    23   5.6  
SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom...    22   9.9  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    22   9.9  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 44.8 bits (101), Expect = 2e-06
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -1

Query: 207 KGTSXFGKRXNXTXTLCRXCGRSSYXIPKSKCA 109
           KGT  FG R N + T+CR CG+ S+ I KS CA
Sbjct: 3   KGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCA 35



 Score = 32.3 bits (70), Expect = 0.009
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -2

Query: 140 RHIXFQNQNAPXCGYPAAKXRSXXWSVK 57
           R    Q      CGYPAAK RS  W  K
Sbjct: 25  RSFHIQKSTCACCGYPAAKTRSYNWGAK 52


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 44.8 bits (101), Expect = 2e-06
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -1

Query: 207 KGTSXFGKRXNXTXTLCRXCGRSSYXIPKSKCA 109
           KGT  FG R N + T+CR CG+ S+ I KS CA
Sbjct: 3   KGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCA 35



 Score = 32.3 bits (70), Expect = 0.009
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -2

Query: 140 RHIXFQNQNAPXCGYPAAKXRSXXWSVK 57
           R    Q      CGYPAAK RS  W  K
Sbjct: 25  RSFHIQKSTCACCGYPAAKTRSYNWGAK 52


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 95  DIHTWAHFDFGMXYDDLPHXL 157
           D +TW  +D  + YDD  H +
Sbjct: 215 DPNTWMSYDLLINYDDKEHAI 235


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 98  IHTWAHFDFGMXYDDLPHXLHSVXVXFXR 184
           IH+WA    G+  D +P  L+ V +   R
Sbjct: 181 IHSWAVPSLGIKCDCIPSRLNQVSLSIDR 209


>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 163

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 50  LRPSLTXGXIVXLLQDIHT 106
           +RP L    +  L++DIHT
Sbjct: 120 IRPELNYAGLDKLIEDIHT 138


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 84   FCCRISTXGRILILEXDMTIYH 149
            +CC ++  G+IL+ +    IY+
Sbjct: 2406 YCCVVNVNGKILVKDKLSRIYN 2427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,041
Number of Sequences: 5004
Number of extensions: 7791
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)