Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d19
         (243 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...    47   2e-06
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...    46   6e-06
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...    46   6e-06
04_04_0396 + 24915880-24916222,24916318-24916577,24916689-249167...    27   2.8  
04_04_1411 + 33375988-33376045,33376161-33376551,33376830-333769...    26   4.9  
11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634           25   8.5  

>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = -1

Query: 231 IVKSDKXXKGTSXFGKRXNXTXTLCRXCGRSSYXIPKSKCA 109
           ++ S    KGT  FGKR N T TLC  CGR S+ + KS C+
Sbjct: 16  LLHSSNVGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCS 56



 Score = 32.7 bits (71), Expect = 0.042
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 140 RHIXFQNQNAPXCGYPAAKXRSXXWSVK 57
           R    Q      CGYPAA+ R   WSVK
Sbjct: 46  RSFHLQKSTCSSCGYPAARIRKYNWSVK 73


>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 19/33 (57%), Positives = 22/33 (66%)
 Frame = -1

Query: 207 KGTSXFGKRXNXTXTLCRXCGRSSYXIPKSKCA 109
           KGT  FGKR N T TLC  CGR S+ + KS C+
Sbjct: 3   KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCS 35



 Score = 32.7 bits (71), Expect = 0.042
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 140 RHIXFQNQNAPXCGYPAAKXRSXXWSVK 57
           R    Q      CGYPAA+ R   WSVK
Sbjct: 25  RSFHLQKSTCSSCGYPAARIRKYNWSVK 52


>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 19/33 (57%), Positives = 22/33 (66%)
 Frame = -1

Query: 207 KGTSXFGKRXNXTXTLCRXCGRSSYXIPKSKCA 109
           KGT  FGKR N T TLC  CGR S+ + KS C+
Sbjct: 3   KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCS 35



 Score = 32.7 bits (71), Expect = 0.042
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 140 RHIXFQNQNAPXCGYPAAKXRSXXWSVK 57
           R    Q      CGYPAA+ R   WSVK
Sbjct: 25  RSFHLQKSTCSSCGYPAARIRKYNWSVK 52


>04_04_0396 +
           24915880-24916222,24916318-24916577,24916689-24916784,
           24916889-24917059,24917262-24917975
          Length = 527

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 117 KCAXVWISCSKXTIXPLVSEGLSAGRXYW 31
           KCA VW  C    +   +S  + AG  YW
Sbjct: 250 KCAEVWRPCVYMYVSLSLSLDIQAGMFYW 278


>04_04_1411 +
           33375988-33376045,33376161-33376551,33376830-33376912,
           33377209-33377297,33377481-33377554,33377768-33377818,
           33377861-33377900,33378567-33378593,33379191-33379874
          Length = 498

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +1

Query: 1   QSSNDACGQIPVXPSCA*TFTDQXXDRXFAAG----YPHXGAF 117
           QSSN++CG IP     A  F+        AAG    YP+  AF
Sbjct: 450 QSSNNSCGSIPFATPIA--FSGSYESSMTAAGTFGYYPNVAAF 490


>11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634
          Length = 795

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 122 FGMXYDDLPHXLHSVXVXFXRLP 190
           F   +DDLPH L S  + F   P
Sbjct: 383 FSTSFDDLPHDLKSCFLYFAAYP 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,510,403
Number of Sequences: 37544
Number of extensions: 52255
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)