Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d19
         (243 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical pr...    44   2e-05
Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical pr...    44   2e-05
AL033536-2|CAA22139.1|  319|Caenorhabditis elegans Hypothetical ...    25   7.1  
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase...    25   9.4  
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase...    25   9.4  
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de...    25   9.4  
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de...    25   9.4  

>Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical
           protein W01D2.1 protein.
          Length = 92

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = -1

Query: 207 KGTSXFGKRXNXTXTLCRXCGRSSYXIPKSKCA 109
           KGT  FGK+   + TLC+ CG+SS+ I K +CA
Sbjct: 3   KGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCA 35



 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 125 QNQNAPXCGYPAAKXRSXXWSVK 57
           Q +    CGYP AK R+  W  K
Sbjct: 30  QKKRCASCGYPDAKKRTYNWGAK 52


>Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical
           protein C54C6.1 protein.
          Length = 91

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = -1

Query: 207 KGTSXFGKRXNXTXTLCRXCGRSSYXIPKSKCA 109
           KGT  FGK+   + TLC+ CG+SS+ I K +CA
Sbjct: 3   KGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCA 35


>AL033536-2|CAA22139.1|  319|Caenorhabditis elegans Hypothetical
           protein Y53C10A.5 protein.
          Length = 319

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 62  LTXGXIVXLLQDIHTWAHFDFGM 130
           L  G  V L   IH W+H  FG+
Sbjct: 222 LLLGIYVALTNQIHKWSHTYFGL 244


>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
            beta protein.
          Length = 1418

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 189  GKRXNXTXTLCRXCGRSSYXIPKSKCAXVWISCS 88
            G R + T ++   CG +S  +  S C+    SCS
Sbjct: 1185 GSRRSLTASVSSGCGSASGTVTVSVCSPSGASCS 1218


>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
            beta homolog EGL-8 protein.
          Length = 1431

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 189  GKRXNXTXTLCRXCGRSSYXIPKSKCAXVWISCS 88
            G R + T ++   CG +S  +  S C+    SCS
Sbjct: 1198 GSRRSLTASVSSGCGSASGTVTVSVCSPSGASCS 1231


>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
            defective protein 8,isoform a protein.
          Length = 1419

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 189  GKRXNXTXTLCRXCGRSSYXIPKSKCAXVWISCS 88
            G R + T ++   CG +S  +  S C+    SCS
Sbjct: 1186 GSRRSLTASVSSGCGSASGTVTVSVCSPSGASCS 1219


>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
            defective protein 8,isoform b protein.
          Length = 1431

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 189  GKRXNXTXTLCRXCGRSSYXIPKSKCAXVWISCS 88
            G R + T ++   CG +S  +  S C+    SCS
Sbjct: 1198 GSRRSLTASVSSGCGSASGTVTVSVCSPSGASCS 1231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,763,594
Number of Sequences: 27780
Number of extensions: 43182
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)