Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d19
         (243 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    20   5.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   5.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         19   8.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    19   8.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    19   8.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   8.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    19   8.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    19   8.8  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = +2

Query: 98  IHTWAHFDFGMXYDD 142
           I+ W H DF    D+
Sbjct: 40  IYEWKHIDFDFGSDE 54


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 89  LQDIHTWAHFDF 124
           L  IH W +FD+
Sbjct: 32  LNVIHEWKYFDY 43


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 5/15 (33%), Positives = 8/15 (53%)
 Frame = +2

Query: 98  IHTWAHFDFGMXYDD 142
           +H W  FD+    D+
Sbjct: 34  LHEWKFFDYDFGSDE 48


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 79  RXFAAGYPH 105
           R F  GYPH
Sbjct: 444 RRFVEGYPH 452


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 79  RXFAAGYPH 105
           R F  GYPH
Sbjct: 359 RRFVEGYPH 367


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 79  RXFAAGYPH 105
           R F  GYPH
Sbjct: 678 RRFVEGYPH 686


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 5/15 (33%), Positives = 8/15 (53%)
 Frame = +2

Query: 98  IHTWAHFDFGMXYDD 142
           +H W  FD+    D+
Sbjct: 34  LHEWKFFDYDFGSDE 48


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 5/15 (33%), Positives = 8/15 (53%)
 Frame = +2

Query: 98  IHTWAHFDFGMXYDD 142
           +H W  FD+    D+
Sbjct: 34  LHEWKFFDYDFGSDE 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,436
Number of Sequences: 438
Number of extensions: 465
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)