Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15d18
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0117 + 925850-925988,926075-926494,926607-926785,927568-92... 29 1.8
01_06_0025 - 25716563-25718332 28 2.3
01_01_1068 - 8413269-8413589,8414011-8414262,8417472-8417603,841... 28 2.3
04_02_0027 + 8715882-8715928,8716570-8716934,8717147-8717506,871... 27 4.1
03_04_0007 + 16265360-16266982 27 4.1
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137... 27 4.1
11_06_0125 - 20356683-20357071,20359531-20362285 27 5.4
04_03_0054 - 10296278-10296727 27 7.1
01_05_0035 + 17440828-17441364 27 7.1
10_08_0129 - 15025076-15025858,15025951-15026283 26 9.4
10_08_0122 - 14982676-14983043,14983957-14985145 26 9.4
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 26 9.4
04_03_0873 + 20455860-20456042,20456864-20457102,20457596-204576... 26 9.4
>03_01_0117 +
925850-925988,926075-926494,926607-926785,927568-927686,
928180-928498
Length = 391
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -1
Query: 343 DFGLSSENIMSLSPFFRSPFTDVTGGMISHQLLGRCQKEEA--RYMDCL 203
+F + EN++ R P + GG++ +LLGR QK+EA RY C+
Sbjct: 241 EFPMLQENVLQSFKLPR-PVLCI-GGIVKVELLGRVQKQEADDRYYICI 287
>01_06_0025 - 25716563-25718332
Length = 589
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 94 HERQRQISQGKLTGDEKYVSPRVDSY 17
H+RQR ++G+ G Y +P +D+Y
Sbjct: 443 HDRQRVATRGQADGVRLYTTPHMDTY 468
>01_01_1068 -
8413269-8413589,8414011-8414262,8417472-8417603,
8417684-8417812
Length = 277
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 32 GAHILFVACKFSLRNLSLPLMSYCQKSLKLFGK 130
GA+IL V + +L +S+PL S CQ++ K GK
Sbjct: 130 GANILTVVLRDALNMISIPLASCCQRN-KDMGK 161
>04_02_0027 +
8715882-8715928,8716570-8716934,8717147-8717506,
8718063-8718576,8718657-8718684
Length = 437
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 349 FYDFGLSSENIMSLSPFFRSPFTDVTGGMISHQL 248
F+DF L EN+MSL+ + S F +SHQL
Sbjct: 283 FHDFNL--ENLMSLAKLYPSDFNSGNLRDLSHQL 314
>03_04_0007 + 16265360-16266982
Length = 540
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 94 HERQRQISQGKLTGDEKYVSPRVDSY 17
H+RQR ++G G + +PR+D+Y
Sbjct: 443 HDRQRFAARGDAEGVRLFATPRMDAY 468
>02_04_0490 -
23411742-23412944,23413071-23413595,23413666-23413747,
23413841-23414050,23414371-23414523,23415335-23415447,
23415476-23415622
Length = 810
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 349 FYDFGLSSENIMSLSPFFRSPFTDVTGGMISHQL 248
F+DF L EN+MSL+ + S F +SHQL
Sbjct: 665 FHDFNL--ENLMSLAKLYPSDFNSGNLRDLSHQL 696
>11_06_0125 - 20356683-20357071,20359531-20362285
Length = 1047
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 308 VAVLSLTVYGCYWWHDFPPTSGSLPE 231
V++ +L+VY Y + DF SGSLPE
Sbjct: 390 VSISNLSVYLEYLYLDFNAISGSLPE 415
>04_03_0054 - 10296278-10296727
Length = 149
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 349 FYDFGLSSENIMSLSPFFRSPFTDVTGGMISHQL 248
F+DF + EN+MSL+ + S F +SHQL
Sbjct: 102 FHDFNI--ENLMSLAKLYPSDFNSRNLRDLSHQL 133
>01_05_0035 + 17440828-17441364
Length = 178
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 257 PPTSGSLPERGSQIHGLSRSLWFGTRKGQVRSFVRRL 147
PP LP +HGL R G+ + V + VR L
Sbjct: 31 PPPPSPLPSSAEPLHGLCRKPGAGSHRALVATPVRAL 67
>10_08_0129 - 15025076-15025858,15025951-15026283
Length = 371
Score = 26.2 bits (55), Expect = 9.4
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = -1
Query: 337 GLSSENIMSLSPFFRSPFTDVTGGMISHQLLGRCQKEEARYMDCL----EAYGLERGKVK 170
G++ +++ ++ F + + + LL Q+E+A L + YGLER KVK
Sbjct: 203 GVNVNDVIEINDMDAQVFKALLNFIYTDTLLEMDQEEDATMAQHLLVAADKYGLERLKVK 262
Query: 169 CAHLFGDYHECSTLTKQL 116
C ++ + ++ L
Sbjct: 263 CEERLSNHIDADSVATLL 280
>10_08_0122 - 14982676-14983043,14983957-14985145
Length = 518
Score = 26.2 bits (55), Expect = 9.4
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = -1
Query: 337 GLSSENIMSLSPFFRSPFTDVTGGMISHQLLGRCQKEEARYMDCL----EAYGLERGKVK 170
G++ +++ ++ F + + + LL Q+E+A L + YGLER KVK
Sbjct: 231 GVNVNDVIEINDMDAQVFKALLNFIYTDTLLEMDQEEDATMAQHLLVAADKYGLERLKVK 290
Query: 169 CAHLFGDYHECSTLTKQL 116
C ++ + ++ L
Sbjct: 291 CEERLSNHIDADSVATLL 308
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 26.2 bits (55), Expect = 9.4
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -1
Query: 337 GLSSENIMSLSPFFRSPFTDVTGGMIS-HQLLGRCQKEEARYMDCLEAYGLERGKVKCAH 161
G ++N SLSP +PF +V+ +S H + G+ + LEA G + GK C
Sbjct: 71 GFMAQNT-SLSP---TPFLNVSTSCVSKHVVFGKVVTGMP-LLKKLEAVGSDTGKPTCEV 125
Query: 160 LFGDYHECSTLTKQLK 113
D E S QLK
Sbjct: 126 KIVDCGEVSDSQNQLK 141
>04_03_0873 +
20455860-20456042,20456864-20457102,20457596-20457692,
20457816-20457857,20458060-20458186,20458879-20458991,
20459063-20459126,20459218-20459311,20459393-20459501,
20459803-20459859,20460064-20460126,20460158-20460195,
20460835-20461028,20461266-20461477
Length = 543
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 214 CIWLPLSGSDPEVGGKSC 267
C WLP S S +G +SC
Sbjct: 518 CHWLPQSSSSSNMGARSC 535
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,241,853
Number of Sequences: 37544
Number of extensions: 231553
Number of successful extensions: 523
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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