Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d17
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   3.2  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   9.7  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   9.7  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.7  

>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
 Frame = +2

Query: 575 CLRFLMSH---VKGSALIFC-LVKARAIGEILSNFFINFLHLSTASALSVAKTSMSPTFN 742
           C+  L +H   V   AL  C +V     G+I    F N  + S  S  SV  +S++   +
Sbjct: 504 CVHTLKNHSEPVTSVALGDCEVVSGSEDGKIYLWLFNNAPNESPVSTQSVPISSLNGQRS 563

Query: 743 ASSVLNILAVVSAYSASLLDI 805
            SSV   L+ V  YS+SL +I
Sbjct: 564 NSSVQRALSSVPNYSSSLSNI 584


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 644 IGEILSNFFINFLHLSTASALSVAKTS 724
           +G I SN++IN+  +ST + L  +K S
Sbjct: 790 LGRIASNYYINYQTVSTLNNLLKSKMS 816


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 194 CLVSLLL*SYIHFYIYDNYY 253
           C +S L   YI FY +DNYY
Sbjct: 372 CAMSFLF--YITFYCWDNYY 389


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 395 SKVNEQYFNYKIYNYN 442
           + ++ +Y NYK+YNY+
Sbjct: 827 TNLSRRYINYKVYNYD 842


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,683
Number of Sequences: 5004
Number of extensions: 60375
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)