Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d17
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-14|AAD12843.1|  297|Caenorhabditis elegans Hypothetical...    33   0.24 
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    31   1.3  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    31   1.3  
AL034393-7|CAA22322.2|  337|Caenorhabditis elegans Hypothetical ...    29   5.3  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>AF125459-14|AAD12843.1|  297|Caenorhabditis elegans Hypothetical
           protein Y25C1A.13 protein.
          Length = 297

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 25/84 (29%), Positives = 36/84 (42%)
 Frame = -1

Query: 771 TARMFNTDEALKVGLIDVLATDKADAVXXXXXXXXXXXXISPIARALTKQKIRAEPLTWL 592
           TAR F  DEAL+ GLI  +  D+   +             SPIA   TK+ +        
Sbjct: 200 TARDFGADEALRFGLISRIYDDRQSLLENSIDMAARIAEKSPIAVQGTKETLNYA----- 254

Query: 591 IKNRKQDTDEFLTFVQNPKVQQSL 520
              R+  TD+ L F++   + Q L
Sbjct: 255 ---REHSTDDSLNFIKTWNMSQLL 275


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 113  LSC-GINVPFQRHTMVT*GHLQSQCYISCLVSLLL*SYIHFYIYDNYYNTNSKYLLNQHH 289
            L+C G N+ FQ +     GH  S   I+C V  LL   +   + D Y++ +SK ++++  
Sbjct: 4012 LTCEGHNLEFQNYLRTQPGHTTSVNLINCTVDYLL--RLQESVMDFYWHYSSKEVIDEGG 4069

Query: 290  R*YIL 304
            + Y L
Sbjct: 4070 KEYFL 4074


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 113  LSC-GINVPFQRHTMVT*GHLQSQCYISCLVSLLL*SYIHFYIYDNYYNTNSKYLLNQHH 289
            L+C G N+ FQ +     GH  S   I+C V  LL   +   + D Y++ +SK ++++  
Sbjct: 4004 LTCEGHNLEFQNYLRTQPGHTTSVNLINCTVDYLL--RLQESVMDFYWHYSSKEVIDEGG 4061

Query: 290  R*YIL 304
            + Y L
Sbjct: 4062 KEYFL 4066


>AL034393-7|CAA22322.2|  337|Caenorhabditis elegans Hypothetical
           protein Y18D10A.9 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 691 NRISLVCS*NVDESHLQCFISVEHSSCGECIFSLSLRYSI 810
           +++ L C   +D+SH +   SV  S+ G+C+ S S   S+
Sbjct: 52  SKMRLECRTTLDDSHTRAVRSVAFSNDGKCLVSASFDASV 91


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical
           protein C41A3.1 protein.
          Length = 7829

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 153 WLLEVIYKVNATFHAWCLYYC 215
           WLL ++Y+ N TFH+    YC
Sbjct: 501 WLLRMLYEKNETFHSTVDKYC 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,674,989
Number of Sequences: 27780
Number of extensions: 331395
Number of successful extensions: 845
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)