Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d16
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    52   1e-07
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   5.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.4  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   7.2  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.5  

>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
 Frame = -1

Query: 765 IGTRMYSGFGGQVDFIRGAAEAVDGKGKPIIALVSNTKKGESKIVPTLKVGAGVVTTRAH 586
           +G+RM +G GG  DF+R A  ++     P +        G + IVP   +   V  T   
Sbjct: 385 LGSRMLNGLGGSADFLRNAKLSI--MHTPSVRPSKKDPTGITCIVP---MATHVDQTEHD 439

Query: 585 VHYVVTEQGIAYLFGKTLRQRAYELI-KIAHPDHREALEK 469
           +  +VTEQG+A L G +  +RA E+I K AHPD++  L +
Sbjct: 440 LDILVTEQGLADLRGLSPTERAREVIDKCAHPDYKPLLRE 479


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 797 WTSPDRYAPTLSVPACTPVSAGRLTSSAAPRRLWT--VKANPS*LSSPT 657
           W  P  + P ++    +PVS     S+AAP  L    + ANP  LSS T
Sbjct: 46  WLRPPGWQPPVNTGPTSPVSIN--ASNAAPSNLKASYIPANPRRLSSST 92


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 398  TCFKTKLLKLVLANVMVDFDNLKCSVEMNR 309
            T F  K  +  + N++ DF N K S ++NR
Sbjct: 1172 TLFPDKHFRGNIENILTDFSNWKLSAKLNR 1201


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 683 LPLPSTASAAPRMKSTCPPKPEYMRVPIESAHICPVRS 796
           +P PS ASA P + S  PP P  +  P + A   PV+S
Sbjct: 149 IPPPSPASAPP-IPSKAPPIPSSLPPPAQPA--APVKS 183


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 687 GKPIIALVSNTKKGESKIVPTLKVGAGVVTTRAHVHYVVTEQGIAYLFGKTLRQ 526
           G+P+    S        +VP L++        ++VH +++   IA + GKT+ Q
Sbjct: 427 GRPLSIADSECDAALPTVVPELEIEGSA----SNVHNIISMSKIAKIMGKTMEQ 476


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 603 VTTRAHVHYVVTEQGIAYLFGKTLRQRAYELIKIAH 496
           VTTR+  H+      I Y FGK    +  EL+ I +
Sbjct: 131 VTTRSISHFRAILDSIRYPFGKDHASKNMELLPITY 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,335
Number of Sequences: 5004
Number of extensions: 61017
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)