Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15d16
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820 33 0.35
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 31 1.4
06_01_0420 + 2998269-2999195 30 1.9
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422... 30 2.5
12_01_0149 - 1150949-1151041,1151145-1151190,1151343-1151460,115... 29 3.3
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361... 29 3.3
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 29 3.3
09_04_0430 + 17502387-17503505 28 7.5
07_01_0990 - 8354014-8354397,8354569-8354697,8354830-8355144,835... 28 9.9
>03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820
Length = 292
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 662 ETRAMMGLPLPSTASAAPRMKSTCPPKPEYMRVPIESAHICP 787
E RA+ P P S+A S PP P YM++P + ICP
Sbjct: 211 ELRALKFAPPPP--SSAAHQPSPAPPAPFYMQLPAATLTICP 250
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/61 (37%), Positives = 27/61 (44%)
Frame = -2
Query: 755 ACTPVSAGRLTSSAAPRRLWTVKANPS*LSSPTPRRARAKSCLRSKSELVW*RLGLTCIT 576
A P SA RL +SA P +P+ P P RARA + RS S R G T
Sbjct: 16 AMAPTSAPRLPTSAPP-------ISPASSRKPKPNRARAGTLCRSSSRAERHRGGRTSTR 68
Query: 575 W 573
W
Sbjct: 69 W 69
>06_01_0420 + 2998269-2999195
Length = 308
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 646 REQNRAYAQSRSWCGDDSGSRALRGYRTRDSLFIRQNPQ 530
R + R + R+ CG++ G A+RG R + +R P+
Sbjct: 264 RRRRREEMERRAMCGEELGRMAVRGSRMPSAKMVRTRPE 302
>01_03_0076 -
12241408-12241545,12241719-12241790,12242173-12242289,
12243307-12245127,12245361-12245810
Length = 865
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 680 GLPLPSTASAAPRMKSTCPPKPEYMRVPIESAHICPVRST 799
G P P T SAA + + + PP P P+ A + P R+T
Sbjct: 39 GSPSPGTGSAAAQAQFSTPPGPPVFSSPLRPAAV-PFRAT 77
>12_01_0149 -
1150949-1151041,1151145-1151190,1151343-1151460,
1151541-1151637,1151711-1151908,1152024-1152086,
1152384-1152443,1152558-1152660,1154398-1154507
Length = 295
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 481 FAVVWMSDFDQFVCPLSEGFAE*ISYPLFGNHVMHVSPSRHHTSSDFERRHD 636
F V MSD D+ L GFAE + L NH+ + S D ++ HD
Sbjct: 124 FPYVAMSDDDKLEKSLLSGFAENCNNGLGNNHITYTDTC--SVSEDLKKHHD 173
>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
3611984-3612217,3614113-3614138,3614446-3614633,
3615707-3617670,3617938-3618423,3618527-3618894
Length = 2207
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 19 KSQRNKNLHFLHCVQQYMYIQI*RLLHNKIKNLCNVIVFFLNKIILKLHYL 171
+S NK+L FLH + +Q+ L NK+K I + L + ++L YL
Sbjct: 1610 ESFNNKDLEFLHSLSNCTDLQVLALYDNKLK---GQIPYSLGNLSIQLQYL 1657
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1
Query: 690 KGKPIIALVSNTKKGESKIVPTLKVGAGVVTTRAHVHYV 574
KG+P+ LV KG SK P+L G++ T A VH V
Sbjct: 239 KGQPMARLVGRLVKGSSKPHPSLPARGGLLRT-APVHEV 276
>09_04_0430 + 17502387-17503505
Length = 372
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 686 PLPSTASAAPRMKSTCPPKPEYMRVPIESAHI 781
P P +AAP ++ PP P + V + HI
Sbjct: 209 PQPPATAAAPPIEPVAPPSPTFWTVCMSCCHI 240
>07_01_0990 -
8354014-8354397,8354569-8354697,8354830-8355144,
8355448-8355573,8356793-8357206
Length = 455
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 619 FERRHDFALALLGVGDESYDGFAFTVHSLRGAADEVNLPAETGVHA 756
+ +R A ++GVG+E+ + +HS DE LP +HA
Sbjct: 394 YAQRFPAAFFMIGVGNETTMRKVYPLHSPHFVVDEDVLPVGAALHA 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,860,516
Number of Sequences: 37544
Number of extensions: 380317
Number of successful extensions: 1147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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