Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d16
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical pr...   188   4e-48
Z46934-7|CAA87047.1|  472|Caenorhabditis elegans Hypothetical pr...   171   4e-43
AL032632-12|CAA21589.3|  333|Caenorhabditis elegans Hypothetical...    78   6e-15
AL132865-10|CAB60607.2|  279|Caenorhabditis elegans Hypothetical...    31   1.3  
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    29   5.1  
CU457740-3|CAM36333.1|  367|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical
           protein C44B7.10 protein.
          Length = 471

 Score =  188 bits (458), Expect = 4e-48
 Identities = 89/122 (72%), Positives = 104/122 (85%)
 Frame = -1

Query: 801 EVDLTGQICADSIGTRMYSGFGGQVDFIRGAAEAVDGKGKPIIALVSNTKKGESKIVPTL 622
           E+DLTGQ+ +DS+G R  SGFGGQVDFIRGAA   DG GKPIIAL S +KKG+SKIVPT+
Sbjct: 348 EIDLTGQVVSDSVGKRFLSGFGGQVDFIRGAAIGNDGLGKPIIALPSISKKGQSKIVPTI 407

Query: 621 KVGAGVVTTRAHVHYVVTEQGIAYLFGKTLRQRAYELIKIAHPDHREALEKAAFERLKCM 442
             GAGVVT+RAHVHYVVTE GIA L+GK +RQRAYELIKI+HP  RE+L+KAAF+RLK M
Sbjct: 408 NEGAGVVTSRAHVHYVVTEYGIAQLWGKNMRQRAYELIKISHPSQRESLDKAAFDRLKVM 467

Query: 441 PA 436
           P+
Sbjct: 468 PS 469


>Z46934-7|CAA87047.1|  472|Caenorhabditis elegans Hypothetical
           protein ZK1320.9 protein.
          Length = 472

 Score =  171 bits (417), Expect = 4e-43
 Identities = 81/122 (66%), Positives = 97/122 (79%)
 Frame = -1

Query: 801 EVDLTGQICADSIGTRMYSGFGGQVDFIRGAAEAVDGKGKPIIALVSNTKKGESKIVPTL 622
           E+DLTGQI +DSIG   +SGFGGQVDF+  +    DG GK IIAL S T KG++KIVP L
Sbjct: 350 EIDLTGQIVSDSIGRNFFSGFGGQVDFMAASPHGFDGLGKAIIALPSRTTKGQTKIVPFL 409

Query: 621 KVGAGVVTTRAHVHYVVTEQGIAYLFGKTLRQRAYELIKIAHPDHREALEKAAFERLKCM 442
             G+GVVTTRAH  Y+VTE GIA L+GK++RQRAYELI+I+HPD REALEKAAF+R K M
Sbjct: 410 TQGSGVVTTRAHARYIVTEHGIANLWGKSIRQRAYELIQISHPDDREALEKAAFDRFKVM 469

Query: 441 PA 436
           P+
Sbjct: 470 PS 471


>AL032632-12|CAA21589.3|  333|Caenorhabditis elegans Hypothetical
           protein Y11D7A.1 protein.
          Length = 333

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 37/56 (66%), Positives = 45/56 (80%)
 Frame = -1

Query: 696 DGKGKPIIALVSNTKKGESKIVPTLKVGAGVVTTRAHVHYVVTEQGIAYLFGKTLR 529
           DG GK IIAL S T KG++KIVP L  G+GVVTTRAH  Y+VTE GIA+L+GK++R
Sbjct: 278 DGLGKAIIALPSRTTKGQTKIVPFLAQGSGVVTTRAHAIYIVTEHGIAHLWGKSIR 333



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 19/28 (67%), Positives = 24/28 (85%)
 Frame = -1

Query: 801 EVDLTGQICADSIGTRMYSGFGGQVDFI 718
           E+DLTGQI +DSIG   +SGFGG+VDF+
Sbjct: 195 EIDLTGQIVSDSIGRNFFSGFGGRVDFM 222


>AL132865-10|CAB60607.2|  279|Caenorhabditis elegans Hypothetical
           protein Y62E10A.13b protein.
          Length = 279

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +2

Query: 650 FLVLETRAMMGLPLPSTASAAPRMKSTCP 736
           +L L T  M+ + LP+TASA PR  ST P
Sbjct: 9   YLFLATLIMIRVALPTTASAIPRSISTSP 37


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 686 PLPSTASAAPRMKSTCPPKPEYMRVPIESAHIC 784
           P+P+T +  P+  +T PP PE    P  S   C
Sbjct: 253 PIPTTKTTVPQQWTTLPPGPEPTPGPGPSGECC 285


>CU457740-3|CAM36333.1|  367|Caenorhabditis elegans Hypothetical
           protein C50E10.3 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 1   IFVDNNKSQRNKNLHFLHCV-QQYMYIQI*RLLHNKIKNLCNVIVFFL 141
           IF+ N ++ R   L FL  + QQ+M + I  LL   +    NV++F +
Sbjct: 154 IFIKNYENTRRLYLLFLIILFQQFMVLSIVYLLTYNLMKFINVLIFLI 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,703,124
Number of Sequences: 27780
Number of extensions: 346465
Number of successful extensions: 969
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)