Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d16
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.4  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   5.8  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   5.8  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   5.8  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   5.8  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   5.8  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   5.8  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   5.8  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   5.8  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   5.8  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   5.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.8  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   7.6  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 667 RLQHQEGREQNRAYAQSRSWCGDDSGSRALRGYRTRDSLFIRQNPQT---EGIRIDQN 503
           +L  ++ ++      +SRSW   D+ +   + Y +++ L +   P T     ++ID++
Sbjct: 343 KLARKQFQKNTTGLERSRSWSSLDNTNTNDQDYSSQNYLTVHSFPSTLNIPSVKIDED 400


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 145 KIILKLHYLTINIGFFNKACRLAFH*HLPQYVNIDEMQILMLPITIY 285
           KII   + L+ N  + N       H +   Y NI+ ++ + +P+ +Y
Sbjct: 80  KIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVY 126


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 145 KIILKLHYLTINIGFFNKACRLAFH*HLPQYVNIDEMQILMLPITIY 285
           KII   + L+ N  + N       H +   Y NI+ ++ + +P+ +Y
Sbjct: 80  KIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVY 126


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 145 KIILKLHYLTINIGFFNKACRLAFH*HLPQYVNIDEMQILMLPITIY 285
           KII   + L+ N  + N       H +   Y NI+ ++ + +P+ +Y
Sbjct: 80  KIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVY 126


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 145 KIILKLHYLTINIGFFNKACRLAFH*HLPQYVNIDEMQILMLPITIY 285
           KII   + L+ N  + N       H +   Y NI+ ++ + +P+ +Y
Sbjct: 80  KIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVY 126


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 145 KIILKLHYLTINIGFFNKACRLAFH*HLPQYVNIDEMQILMLPITIY 285
           KII   + L+ N  + N       H +   Y NI+ ++ + +P+ +Y
Sbjct: 80  KIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVY 126


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 145 KIILKLHYLTINIGFFNKACRLAFH*HLPQYVNIDEMQILMLPITIY 285
           KII   + L+ N  + N       H +   Y NI+ ++ + +P+ +Y
Sbjct: 80  KIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVY 126


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 145 KIILKLHYLTINIGFFNKACRLAFH*HLPQYVNIDEMQILMLPITIY 285
           KII   + L+ N  + N       H +   Y NI+ ++ + +P+ +Y
Sbjct: 80  KIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVY 126


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 145 KIILKLHYLTINIGFFNKACRLAFH*HLPQYVNIDEMQILMLPITIY 285
           KII   + L+ N  + N       H +   Y NI+ ++ + +P+ +Y
Sbjct: 80  KIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVY 126


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 145 KIILKLHYLTINIGFFNKACRLAFH*HLPQYVNIDEMQILMLPITIY 285
           KII   + L+ N  + N       H +   Y NI+ ++ + +P+ +Y
Sbjct: 313 KIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVY 359


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 145 KIILKLHYLTINIGFFNKACRLAFH*HLPQYVNIDEMQILMLPITIY 285
           KII   + L+ N  + N       H +   Y NI+ ++ + +P+ +Y
Sbjct: 313 KIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVY 359


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 766 RVGAYLSGEVHL 801
           RVG YLSGE+ L
Sbjct: 557 RVGKYLSGELRL 568


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 145 KIILKLHYLTINIGFFNKACRLAFH*HLPQYVNIDEMQILMLPITIY 285
           KII   + L+ N  + N       H +   Y NI+ ++ + +P+ +Y
Sbjct: 80  KIISNNNPLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVY 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,192
Number of Sequences: 438
Number of extensions: 4128
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)