Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d12
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...   226   3e-60
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    30   0.35 
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    29   0.61 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    29   0.80 
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    28   1.9  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    26   7.5  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   7.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.9  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score =  226 bits (552), Expect = 3e-60
 Identities = 116/227 (51%), Positives = 150/227 (66%), Gaps = 1/227 (0%)
 Frame = -1

Query: 820 THILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTLEAKDPIKV 641
           +H+ +  +  GK V+PR+AA  DV  I+DIIG+  A+TFVR  YAGN  +T+  KDPIK+
Sbjct: 115 SHVFSAHSTVGKGVMPRLAAMFDVMQISDIIGVVSADTFVRPTYAGNVNVTVSTKDPIKI 174

Query: 640 ITVRGTAFPAEPLEGGSAAIDKAPEGDYKTDLVEFLKQELTKSDRPELTSAKNIVSGGRG 461
           +TVR +AF A P  G  AA            L E++ + + K+ RP+L+SA+ +V+GGR 
Sbjct: 175 VTVRASAFDAAPSSGEGAATVVEGIDPKPAALQEWVSENIIKNARPDLSSAERVVAGGRP 234

Query: 460 LKSGDNF-KLLYDLADKLNXXXXXXXXXXXXGFVPNDLQIGQTGKIVAPDLYIAVGISGA 284
           LK  + F ++L  LADKL             G+  N LQIGQTGKI+AP LYIAVGI GA
Sbjct: 235 LKDKETFERILTPLADKLGAAIGATRVAVDSGYADNSLQIGQTGKIIAPKLYIAVGIDGA 294

Query: 283 IQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTSKL 143
           IQHLAG+KDSK I AIN+D  APIFQ +D G+V DLF+ VPELT KL
Sbjct: 295 IQHLAGIKDSKVIAAINRDENAPIFQTADVGIVGDLFEIVPELTEKL 341


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 232  KDPEAPIFQVSDYGLVADLFKAVPELTS 149
            KDPE  + +++ + ++ D FK +PE +S
Sbjct: 1276 KDPEGDLLELACFSMMIDFFKVLPEFSS 1303


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 502 ELTSAKNIVSGGRGLKSGDNFKLLYDLA 419
           +LT    I+S  RG KSGDNF  L++LA
Sbjct: 147 DLTQMAKIISTRRG-KSGDNFVYLFELA 173


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 343 GQTG-KIVAPDLYIAVGISGAIQHLAGMKDSKTIVAINKDPEA 218
           G++G + V P  Y+A+   G    +A ++ +K +  +N+D EA
Sbjct: 114 GKSGIRRVVPGEYLAIDAKGRAAMIASVEKNKLVYVLNRDSEA 156


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 316 DLYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLF 173
           D+Y+    +G I+HLA  +  K +VA      +PI     YGL ++LF
Sbjct: 205 DVYLVERATGRIEHLASDQSKKIVVA----EWSPIGHKLVYGLGSNLF 248


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 474 DTIFLALVSSGLSDLVNSCFKNSTRSVL*SPSGALSIAADPPSNGSAGNA 623
           DT+ L   ++GLS    S   NST+    SPS     +AD  S+G +  A
Sbjct: 825 DTLSLKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSGISKKA 874


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 501 SGLSDLVNSCFKNSTRSVL*SPSGALSIAADPPSNGSAGNAVPRTVMTLIGSLASRVNI 677
           SGL +L N+C+ NST  +L     A+   +D  S  ++   +     TL+ S+ S   +
Sbjct: 100 SGLINLGNTCYMNSTVQML----RAIPELSDAVSQFNSSGGLVAEYRTLLNSMQSNAPV 154


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 578  INCCRPSLQWLCRECCATNSDDLDRIFGLKG*YSVTSI---NCSHKGISILDTNDI 736
            +NC   +  W+CR+C +  S  +     + G  S + +   +C+   + + DT+DI
Sbjct: 1131 MNCSDYAQSWVCRDCGSIIS--IMSTISMNGVGSASEVRCRSCAKPALGLEDTSDI 1184


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 19/88 (21%), Positives = 38/88 (43%)
 Frame = +3

Query: 540  STRSVL*SPSGALSIAADPPSNGSAGNAVPRTVMTLIGSLASRVNIALPA*IVLTKVLAS 719
            +T S   S + ++++A+   S+ S+      T  +      + +  +L + I    V  S
Sbjct: 1031 ATASATDSSTSSIAVASVTGSSTSSVATASATDSSTSSVATASITGSLSSSIATASVTGS 1090

Query: 720  LIPMISVIGDTSSLAATRGSTVFPKAVA 803
                ++ +  TSS+  T  ST+   A A
Sbjct: 1091 PTSSVTAVSSTSSVEGTASSTIAAAASA 1118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,691
Number of Sequences: 5004
Number of extensions: 63833
Number of successful extensions: 203
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)