Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d12
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875...   202   3e-52
01_06_1098 + 34518608-34519546                                         32   0.48 
07_03_0716 + 20905041-20905851,20906644-20906825,20907117-209073...    31   1.1  
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874...    29   6.0  
01_05_0248 + 19889750-19889839,19890294-19890381,19890757-19890857     29   6.0  
05_07_0196 + 28352320-28352522,28352679-28352808,28353774-283538...    28   7.9  
05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635     28   7.9  

>03_06_0581 +
           34886728-34886817,34886990-34887175,34887332-34887543,
           34888161-34888318,34888615-34888773,34888921-34888973,
           34889265-34889405,34889788-34889823,34890542-34890776,
           34891017-34891144
          Length = 465

 Score =  202 bits (493), Expect = 3e-52
 Identities = 104/215 (48%), Positives = 147/215 (68%), Gaps = 7/215 (3%)
 Frame = -1

Query: 823 FTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTLE--AKDP 650
           ++H++A +T+FGK +LPR AA LDVSP+TD+  I +   FVR IYAGNA+ T+    +DP
Sbjct: 122 YSHVIASSTSFGKNLLPRAAALLDVSPVTDVTSISEPRVFVRPIYAGNALCTVRYTGEDP 181

Query: 649 IKVITVRGTAF-PAEPLEGGSAA----IDKAPEGDYKTDLVEFLKQELTKSDRPELTSAK 485
             ++++R T+F P E +     A    +D +   +  +    ++  +   ++RP+L +A 
Sbjct: 182 C-MMSIRSTSFSPTEAMSEAKVAPITQVDLSFLSEGSSGKSAWVNLKSQDTERPDLANAP 240

Query: 484 NIVSGGRGLKSGDNFKLLYDLADKLNXXXXXXXXXXXXGFVPNDLQIGQTGKIVAPDLYI 305
            +V+GGRGLKS +NFK+L  LA+KL             GFVPN+LQ+GQTGKIVAP+LY+
Sbjct: 241 VVVTGGRGLKSAENFKVLEQLAEKLGAAVGATRAAVDAGFVPNELQVGQTGKIVAPELYM 300

Query: 304 AVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVS 200
           A G+SGAIQHLAGM+DSK IVA+NKD +APIFQVS
Sbjct: 301 AFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVS 335


>01_06_1098 + 34518608-34519546
          Length = 312

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 456 FKPRPPDTIFLALVSSGLSDLV-NSCFKNSTRSVL*SPSGALSIAADPPSNGSAG 617
           FKPR PD   L+L  SGL  ++ N+    +   V  SP    ++ AD P NG  G
Sbjct: 137 FKPRQPDYTLLSLAVSGLGGILGNASSTAAPAPVSFSPEFDATVRADNP-NGKIG 190


>07_03_0716 +
           20905041-20905851,20906644-20906825,20907117-20907330,
           20907416-20907653,20907905-20908058,20908190-20908461,
           20908703-20908808
          Length = 658

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 607 PLEGGSAAIDKAPEGDYKTDLVEFLKQELTKSDRPELTSAKNIVSGGRG 461
           P    +  I   PEG YKT+L++  K  +T  ++ +L SA N  +G  G
Sbjct: 25  PFCSNANTITHMPEGTYKTNLLQLAKNLITNVNQTQLHSA-NGTAGAAG 72


>03_02_0473 +
           8745721-8745994,8746083-8746090,8746232-8746324,
           8746665-8746893,8747314-8747420,8747560-8747622,
           8747883-8747983,8748996-8749090,8749330-8749350,
           8749987-8750082,8750188-8750308,8750415-8750570,
           8750679-8750869,8751207-8751478,8751853-8751954,
           8752006-8752038,8752132-8752308,8752397-8752466,
           8752512-8752585,8752667-8752908,8752983-8753129,
           8753526-8753751,8753893-8753970,8754378-8754521,
           8754829-8755008,8755335-8755394,8755484-8755523,
           8758653-8759137
          Length = 1294

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 586 AIDKAPEGDYKTDLVEFLKQELTKSDRPELTSAKNIVSGGRG 461
           A D+A      +D VE L  +L ++ +PE T   N +S G G
Sbjct: 490 AYDEAANLQSYSDNVESLDSDLNENSQPEATRKANPLSNGHG 531


>01_05_0248 + 19889750-19889839,19890294-19890381,19890757-19890857
          Length = 92

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 686 SINCSHKGISILDTNDISYW*HIKLGRNS 772
           ++ C  +   I++ +D  YW HIK+ R++
Sbjct: 23  AVGCRRRSHHIIECDDAEYWHHIKIERST 51


>05_07_0196 +
           28352320-28352522,28352679-28352808,28353774-28353851,
           28355562-28355664,28356109-28356302,28356501-28356518
          Length = 241

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 562 DYKTDLVEFLKQELTKSDRPELTSAKNIVSGGRGLKSGDNFKLLYD 425
           D+K+ +     ++    D PEL SA+   SG    + GD+   +Y+
Sbjct: 196 DFKSVVQRLTGKDAVAGDAPELNSAQRFGSGREASRHGDHKVRIYE 241


>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
          Length = 819

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 477 TIFLALVSSGLSDLVNSCFKNSTRSV 554
           T FLAL  S LSD +NS F  S R +
Sbjct: 442 TAFLALCHSRLSDYINSIFPMSGRGI 467


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,923,316
Number of Sequences: 37544
Number of extensions: 411732
Number of successful extensions: 1181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)