Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15d12
(829 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81130-12|CAB61027.1| 332|Caenorhabditis elegans Hypothetical p... 305 2e-83
Z79695-8|CAB01967.2| 332|Caenorhabditis elegans Hypothetical pr... 305 2e-83
Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family... 29 5.4
U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neur... 28 9.4
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 28 9.4
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 28 9.4
AC006780-1|AAF60644.2| 89|Caenorhabditis elegans Hypothetical ... 28 9.4
>Z81130-12|CAB61027.1| 332|Caenorhabditis elegans Hypothetical
protein F27D4.1 protein.
Length = 332
Score = 305 bits (750), Expect = 2e-83
Identities = 151/230 (65%), Positives = 185/230 (80%), Gaps = 1/230 (0%)
Frame = -1
Query: 829 FXFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTLEAKDP 650
F FT I A ++AFG+ V+PRVAAKLDVS I+D+ + A++F RT+YAGNA+ +++ P
Sbjct: 104 FNFTAITAGSSAFGRGVIPRVAAKLDVSSISDVTEVHSADSFTRTLYAGNAVKKVKSTAP 163
Query: 649 IKVITVRGTAF-PAEPLEGGSAAIDKAPEGDYKTDLVEFLKQELTKSDRPELTSAKNIVS 473
IK++T RGT+F PA+ EGGS A++ AP D KTDL EFL QEL+KS+RP+L +AK +VS
Sbjct: 164 IKLLTFRGTSFEPAK--EGGSGAVENAPSADIKTDLSEFLGQELSKSERPDLATAKVVVS 221
Query: 472 GGRGLKSGDNFKLLYDLADKLNXXXXXXXXXXXXGFVPNDLQIGQTGKIVAPDLYIAVGI 293
GGRGLKSGDNFKL+YDLADKL G+VPND+Q+GQTGKIVAP+LYIA+GI
Sbjct: 222 GGRGLKSGDNFKLIYDLADKLGAGVGASRAAVDAGYVPNDMQVGQTGKIVAPELYIAIGI 281
Query: 292 SGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTSKL 143
SGAIQHLAGMKDSK IVAINKDP+APIFQV+D GL ADLFKAVPELT+ L
Sbjct: 282 SGAIQHLAGMKDSKVIVAINKDPDAPIFQVADIGLKADLFKAVPELTAAL 331
>Z79695-8|CAB01967.2| 332|Caenorhabditis elegans Hypothetical
protein F27D4.1 protein.
Length = 332
Score = 305 bits (750), Expect = 2e-83
Identities = 151/230 (65%), Positives = 185/230 (80%), Gaps = 1/230 (0%)
Frame = -1
Query: 829 FXFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTLEAKDP 650
F FT I A ++AFG+ V+PRVAAKLDVS I+D+ + A++F RT+YAGNA+ +++ P
Sbjct: 104 FNFTAITAGSSAFGRGVIPRVAAKLDVSSISDVTEVHSADSFTRTLYAGNAVKKVKSTAP 163
Query: 649 IKVITVRGTAF-PAEPLEGGSAAIDKAPEGDYKTDLVEFLKQELTKSDRPELTSAKNIVS 473
IK++T RGT+F PA+ EGGS A++ AP D KTDL EFL QEL+KS+RP+L +AK +VS
Sbjct: 164 IKLLTFRGTSFEPAK--EGGSGAVENAPSADIKTDLSEFLGQELSKSERPDLATAKVVVS 221
Query: 472 GGRGLKSGDNFKLLYDLADKLNXXXXXXXXXXXXGFVPNDLQIGQTGKIVAPDLYIAVGI 293
GGRGLKSGDNFKL+YDLADKL G+VPND+Q+GQTGKIVAP+LYIA+GI
Sbjct: 222 GGRGLKSGDNFKLIYDLADKLGAGVGASRAAVDAGYVPNDMQVGQTGKIVAPELYIAIGI 281
Query: 292 SGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTSKL 143
SGAIQHLAGMKDSK IVAINKDP+APIFQV+D GL ADLFKAVPELT+ L
Sbjct: 282 SGAIQHLAGMKDSKVIVAINKDPDAPIFQVADIGLKADLFKAVPELTAAL 331
>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical protein
F21G4.6 protein.
Length = 1885
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 453 DFKPRPPDTIFLALVSSGLSD 515
+FKP P++I L LVSSGLS+
Sbjct: 1588 EFKPGEPESIALKLVSSGLSN 1608
>U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family
protein 9 protein.
Length = 623
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -1
Query: 823 FTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTLEAKDP 650
++ ++P T G TV+ VA + +P+T + + D NT +GN +L + + P
Sbjct: 339 YSTTISPTTPIGSTVITVVANSENNTPLTYSL-LADTNTVSIDEVSGNVVLRKKLEKP 395
>U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neuro d
homolog protein1 protein.
Length = 192
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 373 HRQLHERHPRPHSTY 417
H QLH HP PHS++
Sbjct: 127 HHQLHPSHPPPHSSF 141
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = +2
Query: 605 WLCRECCAT--NSDDLDRIFGLKG*YSVTSINCS 700
WLCR CC N + + G +T I+CS
Sbjct: 1601 WLCRNCCVVFENQPKYQKHMAIHGDTCLTCIHCS 1634
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = +2
Query: 605 WLCRECCAT--NSDDLDRIFGLKG*YSVTSINCS 700
WLCR CC N + + G +T I+CS
Sbjct: 1601 WLCRNCCVVFENQPKYQKHMAIHGDTCLTCIHCS 1634
>AC006780-1|AAF60644.2| 89|Caenorhabditis elegans Hypothetical
protein Y47D9A.4 protein.
Length = 89
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 598 GGSAAIDKAPEGDYKTDLVEFLKQELTKSDRPELT 494
GGS I + E D D + + + L K D+PE T
Sbjct: 51 GGSRGIKSSKEPDSTDDAFKEMAKRLAKKDKPEKT 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,890,966
Number of Sequences: 27780
Number of extensions: 362206
Number of successful extensions: 1017
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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