Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d10
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    52   1e-07
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    29   1.1  

>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 28/75 (37%), Positives = 42/75 (56%)
 Frame = -1

Query: 844 LHELDIEYCDEVAKEAGILQIERAEAPNVHPTFIAALADVVAGHISNGPRISKQFLTRCP 665
           L EL+ +Y ++ AK+ GI  ++R  + N   T I  +AD+VA H+      S+QF  RCP
Sbjct: 310 LKELE-DYIED-AKQKGITGVKRVSSINGSMTAIQGMADLVAEHLKAKVPYSRQFTQRCP 367

Query: 664 HCVSQRCLASKEFFK 620
            C S+ C     FF+
Sbjct: 368 GCTSESCAERINFFQ 382


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 344 HLET*VLRSQYSYNGCPALQTASRQIHSQDVLPPVITLIIIYGFD 478
           H E  + R+    N C ALQT    +  ++V  P  TL+ + G+D
Sbjct: 258 HEENIIYRANRLVNWCTALQTTLSNLEVENVDVPGRTLLKVPGYD 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,277,022
Number of Sequences: 5004
Number of extensions: 67326
Number of successful extensions: 160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)