Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d10
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0005 + 17063717-17063866,17065737-17065855,17066903-170672...    36   0.040
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713...    29   3.5  
01_05_0106 + 18160018-18160243,18160423-18160470,18160816-181609...    29   3.5  

>05_04_0005 +
           17063717-17063866,17065737-17065855,17066903-17067218,
           17067579-17067722,17067909-17067926,17068853-17068954,
           17069358-17069461,17069543-17069669,17069809-17069961,
           17070261-17070361,17070538-17070739,17071245-17071469
          Length = 586

 Score = 35.9 bits (79), Expect = 0.040
 Identities = 20/41 (48%), Positives = 24/41 (58%)
 Frame = -1

Query: 844 LHELDIEYCDEVAKEAGILQIERAEAPNVHPTFIAALADVV 722
           L E+D+EY  E+A E+GI    R  A    PTFI  LAD V
Sbjct: 454 LEEIDVEY-KELALESGIKHWGRVPALGCEPTFITDLADAV 493


>09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,
            7138413-7138538,7138650-7139619,7139641-7139737,
            7140026-7140113,7140336-7140396,7140425-7140447,
            7140663-7140776,7141193-7141306,7144731-7144825,
            7146506-7146824,7147166-7147309,7147463-7147564,
            7147868-7147971,7148121-7148247,7148804-7148845,
            7148939-7149091,7149326-7149426,7149807-7150227
          Length = 1139

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = -1

Query: 844  LHELDIEYCDEVAKEAGILQIERAEAPNVHPTFIAALADVV 722
            L E+D+EY  E+A E+GI    R  A     +FI+ LAD V
Sbjct: 1044 LEEIDMEY-KELALESGIENWGRVPALGCTSSFISDLADAV 1083


>01_05_0106 +
           18160018-18160243,18160423-18160470,18160816-18160974,
           18162056-18162219,18162778-18162885,18163695-18163865,
           18163945-18164478,18164574-18164648,18164724-18164852,
           18164975-18165049,18165129-18165338,18165529-18165681,
           18165763-18165986,18166305-18166422,18166518-18166656,
           18166745-18166946,18166981-18167149,18167190-18167267,
           18167268-18167408,18167717-18167819,18169024-18169324,
           18169450-18169518,18169602-18169626,18170946-18170975
          Length = 1216

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +2

Query: 233 DKNGT---FFFYCLDGRAHGPPDVKGSPEPMDIYNVNPTTHLET*VLRSQYSYNGCPALQ 403
           DK+GT   F    ++G  HG  + +G  + + +Y  +   H E   + S Y       + 
Sbjct: 414 DKSGTNTCFEDLSVNGNLHGSGNSQGDSDSISVYLTDDKVHTEK--VESPYKQKSSDKMA 471

Query: 404 TASRQIHSQDVLPPVITLIII 466
             + +I S D LP ++  ++I
Sbjct: 472 LETIKIVS-DALPKIVPYVLI 491


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,328,757
Number of Sequences: 37544
Number of extensions: 479735
Number of successful extensions: 1201
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)