Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d10
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical p...    30   1.8  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    28   7.2  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   7.2  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   7.2  
AF024493-6|AAB70325.2|  184|Caenorhabditis elegans Hypothetical ...    28   9.5  

>Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical
           protein F49A5.7 protein.
          Length = 411

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 723 TTSASAAMNVGCTFGASALS--IWRIPASLAT 812
           TT+ + + NVGCTFG + ++   WR+  SL T
Sbjct: 137 TTTPAPSNNVGCTFGFNYINGKCWRLVTSLQT 168


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 112  PDGEWSPSPMDFSNARGRAKPLPTVHNTNYIFI 210
            PDGE  P+            PLPT +N NY+ +
Sbjct: 7948 PDGEIIPTDASGKPLSADGSPLPTDNNGNYVLV 7980



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +1

Query: 67    TFAFSALVGRRAYGPPDGEWSPSPMDFSNARGRAKPLPTVHNTNYIFI 210
             T AF A++G      PDGE  P+            PLPT +N NYI +
Sbjct: 10981 TDAFGAVIG------PDGEPIPTDASGKPLDQSGFPLPTDNNGNYILV 11022



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 112  PDGEWSPSPMDFSNARGRAKPLPTVHNTNYIFI 210
            PDGE  P+            PLPT +N NY+ +
Sbjct: 5571 PDGEPIPTDASGKPLSADGSPLPTDNNGNYVIV 5603



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 112  PDGEWSPSPMDFSNARGRAK---PLPTVHNTNYIFI 210
            PDGE  P P D SN R  AK   PLPT +N  Y+ +
Sbjct: 6939 PDGE--PIPTD-SNGRPLAKDGSPLPTDNNGRYVIL 6971



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 112  PDGEWSPSPMDFSNARGRAK---PLPTVHNTNYIFI 210
            PDGE  P P D SN R  AK   PLPT +N  Y+ +
Sbjct: 9476 PDGE--PIPTD-SNGRPLAKDGSPLPTDNNGRYVIL 9508


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 112  PDGEWSPSPMDFSNARGRAKPLPTVHNTNYIFI 210
            PDGE  P+            PLPT +N NY+ +
Sbjct: 7993 PDGEIIPTDASGKPLSADGSPLPTDNNGNYVLV 8025



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +1

Query: 67    TFAFSALVGRRAYGPPDGEWSPSPMDFSNARGRAKPLPTVHNTNYIFI 210
             T AF A++G      PDGE  P+            PLPT +N NYI +
Sbjct: 11026 TDAFGAVIG------PDGEPIPTDASGKPLDQSGFPLPTDNNGNYILV 11067



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 112  PDGEWSPSPMDFSNARGRAKPLPTVHNTNYIFI 210
            PDGE  P+            PLPT +N NY+ +
Sbjct: 5616 PDGEPIPTDASGKPLSADGSPLPTDNNGNYVIV 5648



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 112  PDGEWSPSPMDFSNARGRAK---PLPTVHNTNYIFI 210
            PDGE  P P D SN R  AK   PLPT +N  Y+ +
Sbjct: 6984 PDGE--PIPTD-SNGRPLAKDGSPLPTDNNGRYVIL 7016



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 112  PDGEWSPSPMDFSNARGRAK---PLPTVHNTNYIFI 210
            PDGE  P P D SN R  AK   PLPT +N  Y+ +
Sbjct: 9521 PDGE--PIPTD-SNGRPLAKDGSPLPTDNNGRYVIL 9553


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 112  PDGEWSPSPMDFSNARGRAKPLPTVHNTNYIFI 210
            PDGE  P+            PLPT +N NY+ +
Sbjct: 7993 PDGEIIPTDASGKPLSADGSPLPTDNNGNYVLV 8025



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +1

Query: 67    TFAFSALVGRRAYGPPDGEWSPSPMDFSNARGRAKPLPTVHNTNYIFI 210
             T AF A++G      PDGE  P+            PLPT +N NYI +
Sbjct: 11026 TDAFGAVIG------PDGEPIPTDASGKPLDQSGFPLPTDNNGNYILV 11067



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 112  PDGEWSPSPMDFSNARGRAKPLPTVHNTNYIFI 210
            PDGE  P+            PLPT +N NY+ +
Sbjct: 5616 PDGEPIPTDASGKPLSADGSPLPTDNNGNYVIV 5648



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 112  PDGEWSPSPMDFSNARGRAK---PLPTVHNTNYIFI 210
            PDGE  P P D SN R  AK   PLPT +N  Y+ +
Sbjct: 6984 PDGE--PIPTD-SNGRPLAKDGSPLPTDNNGRYVIL 7016



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 112  PDGEWSPSPMDFSNARGRAK---PLPTVHNTNYIFI 210
            PDGE  P P D SN R  AK   PLPT +N  Y+ +
Sbjct: 9521 PDGE--PIPTD-SNGRPLAKDGSPLPTDNNGRYVIL 9553


>AF024493-6|AAB70325.2|  184|Caenorhabditis elegans Hypothetical
           protein F23F1.7 protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 474 LIFITPVHSLFIAPLFTHAYTFKCYFLLIRHSYT*D 581
           L  + PV+S+ IAP F    T K  + LI+++++ D
Sbjct: 6   LCLVLPVYSIPIAPSFKDLQTIKPDYKLIKYTFSRD 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,395,493
Number of Sequences: 27780
Number of extensions: 396967
Number of successful extensions: 1081
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)