Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d10
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    27   0.29 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   2.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   2.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.7  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.1  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 532 IHLNAIF-YSYAIPILKILFYPRSDRRHTIS*RTLSTRDISDSRNVDIWSGTASRSS 699
           I +  IF +SY IP++ I++Y      H ++    + R+ +   NVD     A+ SS
Sbjct: 210 IFVATIFTFSYCIPMILIIYYYSQIVSHVVN-HEKALREQAKKMNVDSLRSNANTSS 265



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/33 (21%), Positives = 16/33 (48%)
 Frame = +2

Query: 164 EPNPCLLFTIRIIYLYVLYACRIDKNGTFFFYC 262
           EPNP L + + ++Y+   +   +      + +C
Sbjct: 42  EPNPSLHYLLALLYILFTFLALLGNGLVIWIFC 74


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 109 PPDGEWSPSPMDFSNARG 162
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +2

Query: 203 YLYVLYACRIDKNGTFFFYCLDGRAHGPPDVKGSPEPMDIYNVNPTTHLET 355
           +L V   CR   N   F Y L       PD K  P P  +  V P  ++++
Sbjct: 109 FLSVAVYCRDRLNPNLFIYALSVAILHRPDTKDLPVP-PLTEVFPDKYMDS 158


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 694 ISKQFLTRCPHCVSQRCLA 638
           I K+   RC +C  Q+CLA
Sbjct: 154 IDKRQRNRCQYCRYQKCLA 172


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 694 ISKQFLTRCPHCVSQRCLA 638
           I K+   RC +C  Q+CLA
Sbjct: 154 IDKRQRNRCQYCRYQKCLA 172


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 72 KSFLIYLFSLCMCSYL 25
          K+ +I LF+LC+ SY+
Sbjct: 2  KTIVILLFTLCIVSYM 17


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 85  LVGRRAYGPPDGEWSP 132
           L+G R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 281 GPPDVKGSPEPMDIY 325
           GP  +KG  EPM+++
Sbjct: 579 GPVTMKGKSEPMNVW 593


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 281 GPPDVKGSPEPMDIY 325
           GP  +KG  EPM+++
Sbjct: 579 GPVTMKGKSEPMNVW 593


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,818
Number of Sequences: 438
Number of extensions: 4965
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)