Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d09
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   2.4  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   2.4  

>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -3

Query: 583 YQMSSILLPATISRNVSIKGLIYSYNRLMNLEKS*LLIKRSETMVLDD 440
           ++ SS  L AT+ R++S+  L  S    ++L K+  L  R  ++++DD
Sbjct: 797 HRWSSAFLKATVERDMSVPVLTTSRMPTISLSKAKELRTRPPSLLIDD 844


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 236 YKFKYRNKISNCNYE 192
           Y+F+Y+N++SNC  E
Sbjct: 257 YQFRYQNRVSNCQIE 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,147
Number of Sequences: 5004
Number of extensions: 46720
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)