Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d08
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    27   2.1  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   4.9  
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    25   6.5  

>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 24/86 (27%), Positives = 36/86 (41%)
 Frame = -1

Query: 367 DTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTITNDSEMETKSVIPDTGAKCGR 188
           DT   K    L  +EH  +  E+Y EK  N++   +T I        K V+ +  AK G 
Sbjct: 115 DTFPAKAQKALTFLEHHLRDLEDYAEKSKNNVETLMTDI--------KDVV-EHAAKLGA 165

Query: 187 HYQFTDEECIVTLTHENASVSGKRYF 110
               T EE  V   +    + G R++
Sbjct: 166 QRLITLEELPVQWHNNPYIIRGYRFY 191


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 364  TMTI-KNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTITNDSEMETKS 221
            T TI K +      + K+K+     + MP+  IK + T   D   +TKS
Sbjct: 1314 TSTIDKTTGAPELAQKKYKVYVGQGKNMPHKTIKIIVTDNQDHSFKTKS 1362


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 161 TFFISKLIVTSTFSSCVRYNR 223
           T  +S LIV   FS CV+Y R
Sbjct: 35  TILLSVLIVVLVFSQCVQYIR 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,632
Number of Sequences: 5004
Number of extensions: 40462
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)