Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d08
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0014 - 12253341-12253358,12253520-12253729,12254388-122545...    29   1.6  
06_01_0337 - 2432823-2432933,2433280-2433373,2434079-2434170,243...    29   2.8  
12_01_0640 - 5391407-5391523,5391659-5391748,5391837-5391901,539...    28   3.7  
01_06_1086 - 34421837-34422311,34422426-34422612,34423162-344232...    27   8.7  

>11_04_0014 -
           12253341-12253358,12253520-12253729,12254388-12254523,
           12254631-12254752,12254789-12254842,12254872-12255161,
           12255737-12255948,12256008-12256475,12256560-12256856,
           12257467-12258329,12258417-12258490,12258616-12258650,
           12259024-12259087,12259452-12259733,12259870-12259946,
           12260045-12260325
          Length = 1160

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -1

Query: 442 FSGVPFMGRKMMSMSSPLMEISIDGDTMTIKNS--SLLRTVEHKFKLG 305
           FSGV  M ++    + P++EI+    T+T+K S   LLR+V  K + G
Sbjct: 437 FSGVISMAKEHDVSTRPVIEIAFKDLTLTLKGSKKKLLRSVTGKLRPG 484


>06_01_0337 -
           2432823-2432933,2433280-2433373,2434079-2434170,
           2434565-2434679,2435253-2435335,2435544-2435654,
           2435884-2435971,2436004-2436326
          Length = 338

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 256 TITNDSEMETKSVIPDTGAKCGRHYQFTDEE 164
           T+  ++  + K++ PD GA     YQ+TD E
Sbjct: 167 TLVKETGQKVKAIFPDAGAAALLKYQWTDAE 197


>12_01_0640 -
           5391407-5391523,5391659-5391748,5391837-5391901,
           5392201-5392288,5392511-5392589,5393232-5393370,
           5393530-5393863
          Length = 303

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 376 IDGDTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTI 251
           +D D  T+K +S L  VEH   +GE       N I+K  T +
Sbjct: 202 VDVDRYTVKYNSALELVEHLRAMGETNALFQRNPILKKDTAL 243


>01_06_1086 -
           34421837-34422311,34422426-34422612,34423162-34423291,
           34423485-34423720,34423804-34423961,34424048-34424128,
           34424216-34424281,34424364-34424432,34424722-34424866,
           34425645-34426138,34426244-34426811,34429529-34429574
          Length = 884

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/87 (21%), Positives = 39/87 (44%)
 Frame = -1

Query: 376 IDGDTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTITNDSEMETKSVIPDTGAK 197
           +DG++ T   ++L    +H+F  G  + E +P    K ++  T++ E   +S  PD    
Sbjct: 25  VDGESYTDSTTNLTYVPDHEFVEGGTHHEVVP----KLISGSTDEQEKTLRS-FPDGQRN 79

Query: 196 CGRHYQFTDEECIVTLTHENASVSGKR 116
           C      + ++ ++  T    +  G R
Sbjct: 80  CYTIPSTSGKKYLIRTTFTYGNYDGLR 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,759,430
Number of Sequences: 37544
Number of extensions: 214115
Number of successful extensions: 346
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)