Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d06
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    31   0.26 
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    30   0.46 
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   1.1  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   2.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   2.5  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    27   3.3  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    27   4.3  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   4.3  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   5.7  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    26   7.5  

>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 384 SQPKCQEYFCIYFLPNLFFYTMECLLLSSIC-LRVHLLRL 500
           SQP  Q +  ++FL +L +Y  EC++  S C LR  L  L
Sbjct: 445 SQPWTQLWVTLWFLSSLQYYAYECVIKPSYCKLRESLTEL 484


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 306 LLCGELNISRNEGCTSISLLRILPQ*SQPKCQEYFC 413
           L+ G+LN  ++  C ++    ILP+  QP C E FC
Sbjct: 158 LITGDLNAGKSTLCNALVHKDILPEDQQP-CTEVFC 192


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
 Frame = -2

Query: 369 SLTMIWMYTLRSVRYLVLHKGGKHVSLVT--YAPFGR---NRSMKVPIEDICCQERRTVA 205
           +LT+I     R++ Y +     +   +VT   +PF +   ++S+ VP +D+      ++ 
Sbjct: 159 TLTLILFLPRRNI-YSISTLPSQRFEIVTGFLSPFNKLYFSKSLIVPRKDVSIVTY-SLQ 216

Query: 204 KVQLPLKVRNRMMHYMLDMRGEF 136
           K  + LK+R+R  +Y+L+  G++
Sbjct: 217 KNPITLKIRDRPFYYLLNANGKY 239


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 478 RQIEDNRRHSMV*KNKFGRK*IQKYSWHFGCDYWGRILN 362
           RQ+    R+++   +K  RK +Q +S+    D+W R+L+
Sbjct: 407 RQLAITLRNTIHQPSKDSRKPVQSWSYVHSLDFWARLLS 445


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +2

Query: 218 LS*QQISSMGTFMDRLRPNGA*VTNETCLPPLWRTKYLTERRVYIHIIVKDPAPIITAK 394
           LS  Q   +   + +  P    V  +  L  + +TK  TE     H+I   P P IT K
Sbjct: 735 LSADQCKQLANVLTQASPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPTPQITVK 793


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -2

Query: 204 KVQLPLKVRNRMMHYMLDMRGEFKNPLL 121
           ++  P +  N+M+ YM++ +G+F + +L
Sbjct: 357 QILFPGRTNNQMLRYMMECKGKFSHKML 384


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -2

Query: 237 DICCQERRTVAKVQLPLKVRNRMMHYMLDMR--GEFKNPLLFDCTAGLLRKW 88
           ++ CQE   +   ++ L    +++ ++  +   G+F+ P L  C A L+++W
Sbjct: 290 ELYCQEAGGIIGDEMGLGKTIQIVSFLSSLHHSGKFQKPALIVCPATLMKQW 341


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = -2

Query: 645 ARTIHDVNTNVA-KDVI-LFKYENPSFYKYMNIFAVVQYA-FWMYLGIFAFSTLKDAPVD 475
           A+ +H  N ++   DV+ L   ENP   + ++I+ ++QYA F   L + + +T++    D
Sbjct: 59  AQMMHGENMSLYFPDVVKLVASENPEIRRLVHIY-LLQYAEFNPDLALLSVNTVQKTLYD 117

Query: 474 KSKITEDT 451
           K+ +T  T
Sbjct: 118 KNPLTRST 125


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 429 NLFFYTMECLLLSSICLRVHLLRLKTRIYL---NTSKMHIELQRICSYTYKKKD 581
           N+FF + +C+  SS  +   L+RL +   L      K H +  +I +Y    +D
Sbjct: 321 NIFFNSFDCIFFSSTKVPCQLIRLPSDFVLCKMKGKKEHKDAFKIANYLGSPED 374


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
 Frame = +1

Query: 214 PSFLTANIFNGNFHGSIATKWSVSDQ*NMLASFVEN*ISHGTKGVHPYHC*GSCPNNH-- 387
           PS +  NI++ +    +  K S  +Q   L++  EN I       H Y C      ++  
Sbjct: 191 PSIVRTNIYDPSLDDVLKGKGSTPNQKPSLSNLHENNIDQSDSPQHCYCCGNKFNESYYQ 250

Query: 388 SQSAK--SIFVFIFSQIYFSIPWSVFCY 465
           SQ+A+  ++ +  + Q  F  P ++  Y
Sbjct: 251 SQTAQKYNVCISCYQQNRFPSPTTIADY 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,391,976
Number of Sequences: 5004
Number of extensions: 72757
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)