Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d06
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1048 - 23545060-23546381,23546479-23546554                       31   1.5  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    30   2.0  
03_05_0783 - 27662178-27662237,27662659-27662700,27662791-276628...    28   7.9  

>07_03_1048 - 23545060-23546381,23546479-23546554
          Length = 465

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +2

Query: 290 NETCLPPLWRTKYLTERRVYIHIIVKDPAP----IITAKVPRVFLYLFSPKFIFLY 445
           ++T   P WRT++  ER +++ ++ +   P    I++A V + F        +FLY
Sbjct: 229 DDTVATPAWRTRWREERALWLELLARPTEPVRRNIVSALVAKAFQQASGIGSMFLY 284


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = -2

Query: 468 KITEDTPWYRKINLGENKYKNTLGTLAVIIGAGSLTMI 355
           K+  D  W +  +  ++++K+ LG LAV++G GSL +I
Sbjct: 709 KVAWDVKW-KPPSANQSEHKSCLGFLAVLLGNGSLEVI 745


>03_05_0783 -
           27662178-27662237,27662659-27662700,27662791-27662892,
           27662991-27663147,27663230-27663307,27663391-27663446,
           27663557-27663634,27663736-27663867,27663943-27664078,
           27664252-27664403,27665317-27665391,27665476-27665535,
           27665865-27665944,27666392-27666462,27666549-27666689,
           27667467-27667555,27668657-27668731,27669303-27669401,
           27669526-27669572,27669654-27669875,27671485-27671557,
           27671650-27671823
          Length = 732

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = -2

Query: 627 VNTNVAKDVILFKYENPSFYKYMNIFAVVQYAFWMYLGIFAFSTLKDAPVDKSK--ITED 454
           V T +A   I    EN S +KY   FA++Q+++  ++G F +     A V  S   +T  
Sbjct: 82  VGTGLAAIFINLAVENFSGWKYAATFAIIQHSY--FVGFFVYIVFNLALVFSSVYIVTNF 139

Query: 453 TPWYRKINLGENK-YKNTLGTLAVII 379
            P      + E K Y N + T  +++
Sbjct: 140 APAAAGSGIPEIKGYLNGVDTHGILL 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,397,766
Number of Sequences: 37544
Number of extensions: 412105
Number of successful extensions: 869
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)