Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d06
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61953-2|AAC48081.1|  356|Caenorhabditis elegans Seven tm recept...    31   1.0  
U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF022970-8|AAB69901.2|  231|Caenorhabditis elegans Nuclear hormo...    29   5.4  
AF016664-3|AAB66069.2|  315|Caenorhabditis elegans Serpentine re...    28   7.1  
Z93394-6|CAB61034.1|  766|Caenorhabditis elegans Hypothetical pr...    28   9.4  
U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical pr...    28   9.4  
U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AL117203-24|CAB61043.1|  766|Caenorhabditis elegans Hypothetical...    28   9.4  

>U61953-2|AAC48081.1|  356|Caenorhabditis elegans Seven tm receptor
           protein 185 protein.
          Length = 356

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 400 KSIFVFIFSQIYFSIPWSVFCYLRF 474
           K I++  F  I++   WSV CYL F
Sbjct: 133 KKIYILFFMPIFYGTWWSVLCYLYF 157


>U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical
           protein T14E8.2 protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 234 ICCQERRTVAKVQLPLKVRNRMMHYMLDMRGEFKNPLLFDCTAGLLRKW 88
           +CC+  + V  + L  K+ N  +H+    R    NP+ FD +   +R+W
Sbjct: 31  LCCRRLKYV--IVLIRKLIN--LHFSASSRDRISNPVFFDVSESRMRRW 75


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 343  PSFREIFSSPQRRQACFIGHLRSIWSQSIHESS 245
            P  +   ++P+ R  C   HL  IW  SIH +S
Sbjct: 1328 PGVKIAIANPETRGQCADSHLGEIWVASIHNAS 1360


>AF022970-8|AAB69901.2|  231|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 118 protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 288 PMKHACLLCGELNISRNEGCTS 353
           P+  ACL+CG+ NI R+ G  S
Sbjct: 12  PLVSACLVCGDPNIQRHYGTVS 33


>AF016664-3|AAB66069.2|  315|Caenorhabditis elegans Serpentine
           receptor, class i protein38 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
 Frame = -2

Query: 591 KYENPSF-YKYMNI--FAVVQYAFWMYL--------GIFAFSTLKDAPVDKSKITEDTPW 445
           K  +P +  ++ N+  FA+ +  FW+YL         IF  +      VD  K+ + +  
Sbjct: 166 KLHHPEYALEFSNLPNFAIYELNFWLYLVICFGSLGAIFCGAVFTFTTVDMFKMLKRS-- 223

Query: 444 YRKINLGE-NKYKNTLGTLAVIIGAGSLTMIWMYTLRSVRYLVLHKGGKHVSLVTYAPFG 268
            RKI++    K ++T+ +L     A SL +I +    S+  L+   G + +S +    F 
Sbjct: 224 RRKISVSNFKKQRSTIKSLLAQFAASSLLLIPLLCF-SLVLLLKFDGSQEISNIILTVFS 282

Query: 267 RNRSMKVPI 241
              S+   +
Sbjct: 283 TRSSVNAAV 291


>Z93394-6|CAB61034.1|  766|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1b protein.
          Length = 766

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = -1

Query: 349 VHPSFREIFSSPQRRQAC--FIGHLRSIWS 266
           + PS R I SSP+R+Q+   F+ ++ ++WS
Sbjct: 291 LRPSGRAILSSPRRKQSLQKFLDYVGTVWS 320


>U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical
           protein T13C2.6a protein.
          Length = 909

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 394 FGCDYWGRILNNDMDVHPSFREIFS 320
           F CDYWG+ +   +  H   R  FS
Sbjct: 682 FSCDYWGKNIKTVLHSHQYLRHPFS 706


>U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical
           protein T13C2.6b protein.
          Length = 911

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 394 FGCDYWGRILNNDMDVHPSFREIFS 320
           F CDYWG+ +   +  H   R  FS
Sbjct: 684 FSCDYWGKNIKTVLHSHQYLRHPFS 708


>AL117203-24|CAB61043.1|  766|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1b protein.
          Length = 766

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = -1

Query: 349 VHPSFREIFSSPQRRQAC--FIGHLRSIWS 266
           + PS R I SSP+R+Q+   F+ ++ ++WS
Sbjct: 291 LRPSGRAILSSPRRKQSLQKFLDYVGTVWS 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,435,060
Number of Sequences: 27780
Number of extensions: 400208
Number of successful extensions: 1069
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)