Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15d06
(832 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-3|AAK71993.1| 548|Apis mellifera 1D-myo-inositol-trisp... 24 1.5
AF388659-2|AAK71994.1| 463|Apis mellifera 1D-myo-inositol-trisp... 24 1.5
AF388659-1|AAK71995.1| 782|Apis mellifera 1D-myo-inositol-trisp... 24 1.5
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 24 2.0
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 24 2.0
DQ435325-1|ABD92640.1| 160|Apis mellifera OBP7 protein. 23 4.6
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 23 4.6
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 22 6.0
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 6.0
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 6.0
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 22 8.0
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 22 8.0
>AF388659-3|AAK71993.1| 548|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
Length = 548
Score = 24.2 bits (50), Expect = 1.5
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -2
Query: 153 DMRGEFKNPLLFDCTAGL 100
D+ G+F++P + DC G+
Sbjct: 334 DLLGDFEHPCVMDCKVGV 351
>AF388659-2|AAK71994.1| 463|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
Length = 463
Score = 24.2 bits (50), Expect = 1.5
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -2
Query: 153 DMRGEFKNPLLFDCTAGL 100
D+ G+F++P + DC G+
Sbjct: 249 DLLGDFEHPCVMDCKVGV 266
>AF388659-1|AAK71995.1| 782|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
Length = 782
Score = 24.2 bits (50), Expect = 1.5
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -2
Query: 153 DMRGEFKNPLLFDCTAGL 100
D+ G+F++P + DC G+
Sbjct: 568 DLLGDFEHPCVMDCKVGV 585
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 23.8 bits (49), Expect = 2.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 535 CILDVFRYIRVFNLKRCTRRQIEDNRRHSM 446
CI+ VF Y +F R R+ NR+ ++
Sbjct: 356 CIIMVFLYYNIFKALRNRARKARANRKPNL 385
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 23.8 bits (49), Expect = 2.0
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = -2
Query: 522 YLGIFAFSTLKDAPVDKSKITEDTPWYRKINLGENKYKNTLGT 394
+LG F ++ +PV ++ + + PW+ + K+ GT
Sbjct: 51 FLGPVGFGGVQVSPVQENIVIDKRPWWERYQPISYKWITRSGT 93
>DQ435325-1|ABD92640.1| 160|Apis mellifera OBP7 protein.
Length = 160
Score = 22.6 bits (46), Expect = 4.6
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -2
Query: 396 TLAVII---GAGSLTMIWMYTLRSVRYLVLHKG 307
++AVII G + I +++ +RY ++H G
Sbjct: 13 SVAVIIRANGINEILKIMAVSMKDIRYCIIHMG 45
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 286 DQ*NMLASFVEN*ISHGTKGVHPYHC 363
DQ N+ S + SHG +G PY C
Sbjct: 72 DQKNLYQSHLR---SHGKEGEDPYRC 94
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 22.2 bits (45), Expect = 6.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 592 KKDYILGNVCVDIMNSSC 645
K+D + N+ VDI N C
Sbjct: 303 KEDSLYTNIVVDIRNEDC 320
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 22.2 bits (45), Expect = 6.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 437 FLYHGVSSVIFDLS 478
F+YHG SS D+S
Sbjct: 1817 FIYHGTSSTSSDIS 1830
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 22.2 bits (45), Expect = 6.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 437 FLYHGVSSVIFDLS 478
F+YHG SS D+S
Sbjct: 1813 FIYHGTSSTSSDIS 1826
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 253 ESSH*RYLLSGKKDSGKSTAT 191
E H ++ G DSGKST T
Sbjct: 4 EKIHINIVVIGHVDSGKSTTT 24
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 253 ESSH*RYLLSGKKDSGKSTAT 191
E H ++ G DSGKST T
Sbjct: 4 EKIHINIVVIGHVDSGKSTTT 24
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,414
Number of Sequences: 438
Number of extensions: 4927
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -