Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15d04
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p... 112 5e-26
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos... 42 1e-04
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo... 31 0.15
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 30 0.35
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 28 1.4
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 28 1.9
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.9
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 28 1.9
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 27 3.2
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 27 4.3
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 26 7.5
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 26 7.5
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 25 9.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 9.9
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 25 9.9
>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 112 bits (270), Expect = 5e-26
Identities = 50/104 (48%), Positives = 72/104 (69%)
Frame = -1
Query: 622 TTNEKIVLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIVTDTNM 443
T NE +VLA + + A+++Q+SP+P SSGI+ L A TF + QT TG+KF++ T+
Sbjct: 27 TPNEYLVLAGTIHGVHAISTQISPLPGSSGIQLLEAGTFNMHILQTHTGMKFVLFTEKKT 86
Query: 442 QGTDVVLKRIYELYSDYALKNPFYSLEMPIRCELFDTSLHTLLE 311
+ L++ YELYSDY LKNPFY+LEMPI+C+LFD L ++
Sbjct: 87 TNARLQLQKFYELYSDYVLKNPFYTLEMPIKCQLFDEQLKRYID 130
>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 41.5 bits (93), Expect = 1e-04
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Frame = -1
Query: 592 MFYPLFALASQLSPIPKSSG-IESLTADTFKLSCFQTLTGVKFIIVTDTNMQGTDVVLKR 416
+F +F+L + + I S T +KL ++T T ++ I +T+ + VL++
Sbjct: 49 IFGVVFSLRNMVKKITADQDQFMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQQ 108
Query: 415 IY-ELYSDYALKNPFYSLEMP------IRCELFDTSL 326
IY LY ++ +K+P Y+ P I CE+F +L
Sbjct: 109 IYTTLYVEFVVKHPLYTHVPPSAEEGGINCEIFRITL 145
>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 31.5 bits (68), Expect = 0.15
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -1
Query: 502 LSCFQTLTGVKFIIV-TDTNMQGTDVVLKRIYELYSDYALKNPFYSLEMPIRCELFDTSL 326
+S + T + ++F+++ + + + + ++ELY L +PFY PIR + FD +
Sbjct: 70 ISAYVTPSNMRFMLLHQNQSADNIKLFFQELHELYIK-TLMSPFYQPNQPIRSQAFDLKV 128
Query: 325 HTL 317
++
Sbjct: 129 RSI 131
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 30.3 bits (65), Expect = 0.35
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +3
Query: 660 FSLASIISKTSLLSSVVLPV-----TGDPFT-DSNTCPTFIPSLWPNATTT 794
F +S+IS SL SS VLP T P T S++ +F PS N TTT
Sbjct: 228 FLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTT 278
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -3
Query: 527 ILNG*HIQVVVFSNTHWCKIYNSNRH*YARY*CGPKEDL*VIFRLCT*E 381
ILNG + +V++ S HW + +++ Y C ED+ ++++L T E
Sbjct: 311 ILNG-NKEVIMLSCAHWQEYFSALAFLYGPLDCKNPEDISLLYQLATGE 358
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 763 INVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYPLSLKFGRV-RATTNEKIVL 599
+ +GH +++NG+ VT R DV II + N +S K + + N K++L
Sbjct: 291 LEIGHDWVNLNGNKVTVRAITVGIDVPRIIRSSGNVSVSEKLEELNKRYENMKVIL 346
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -1
Query: 763 INVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYPLSLKFGRVRATT 617
+NVG +LSV +PV + E+++DV D I A LS R ++T+
Sbjct: 560 LNVGPNMLSVGEAPVESTSKEEDKDVPDPI-ANAMAELSSSMRRRQSTS 607
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 565 SQLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIV 458
+++ KS+GIE +T + CF L +K IIV
Sbjct: 613 NEIERFTKSTGIEEITENGILQKCFHLLPFIKNIIV 648
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 414 ILFRTTSVPCILVSVTIINFTPVSV*KHDNL 506
+L+R ++P ILV TI+ FT + HD L
Sbjct: 6 LLYRILTLPIILVGTTILYFTIGTNFPHDEL 36
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 705 VVLPVTGDPFTDSNTCPTFIPSLWPNATT 791
V+L DP +D+ + PTF+PS P+ TT
Sbjct: 13 VMLNQQQDP-SDAQSSPTFVPSANPSLTT 40
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 388 LKNPFYSLEMPIRCELFDTSL 326
LK FY ++P +C FD+SL
Sbjct: 38 LKKSFYKRQLPKQCLAFDSSL 58
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 25.8 bits (54), Expect = 7.5
Identities = 26/92 (28%), Positives = 39/92 (42%)
Frame = +3
Query: 510 VSAVKDSIPEDFGMGLS*LARAKRG*NMLASTIFSFVVALTLPNFRLRG*FSLASIISKT 689
V+ + S F MG S A + + + S+++ + L F F ++ +
Sbjct: 152 VAVSESSSRSSFSMGSSEFASSTWSQSPMQSSLYVSPSSQPLDRFSPAS-FPSKETLTSS 210
Query: 690 SLLSSVVLPVTGDPFTDSNTCPTFIPSLWPNA 785
SL SSV V+ F DSNT SL P A
Sbjct: 211 SLSSSVPRSVSLSNFADSNTSNYPESSLLPAA 242
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 414 ILFRTTSVPCILVSVTIINFTPVSV*KHDNLNVSAVKDSIPE 539
++F TSVP +VS + F + +H +V A +PE
Sbjct: 602 LIFSNTSVPSAIVSKCVAFFWNAAKKQHSKSSVHAELRELPE 643
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 185 FQLDKKKICAIPEINGVPRDGLCLRCG 105
F D+KK CA+ I G +C +CG
Sbjct: 807 FSEDRKKCCALCGIVGTEGLLVCFKCG 833
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 25.4 bits (53), Expect = 9.9
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 646 LKFGRV---RATTNEKIVLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCF 491
L FG + + ++ V AS+ + A A Q+ + K G+ TAD FKLSC+
Sbjct: 121 LNFGEILNCQVNDSQGKVRASVRFSTLASAQQV--VQKLDGV---TADGFKLSCY 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,811
Number of Sequences: 5004
Number of extensions: 66601
Number of successful extensions: 168
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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