Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d04
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024    121   8e-28
06_01_0367 - 2636487-2636498,2636655-2636724,2636831-2636937,263...   116   2e-26
01_05_0102 - 18131640-18131655,18132928-18133046,18133186-181333...    48   9e-06
12_02_0492 + 19668896-19669893,19670886-19670972,19671067-19671097     29   4.5  
11_06_0370 + 22768977-22769523,22769619-22770642,22770784-227711...    29   6.0  

>07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024
          Length = 143

 Score =  121 bits (291), Expect = 8e-28
 Identities = 54/106 (50%), Positives = 74/106 (69%)
 Frame = -1

Query: 628 RATTNEKIVLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIVTDT 449
           R  TN+ + LAS+++ + A++ QLSP P   GI+ L A  F L CFQ+LTG KF  V +T
Sbjct: 29  RTDTNDSLRLASLWHSMHAISQQLSPTPGCEGIDLLQAHNFDLHCFQSLTGTKFFAVCET 88

Query: 448 NMQGTDVVLKRIYELYSDYALKNPFYSLEMPIRCELFDTSLHTLLE 311
             Q  + +LK IYELY+D+ LKNPFY +EMPIRCELFD +L  +++
Sbjct: 89  GAQNIETLLKVIYELYTDFVLKNPFYEMEMPIRCELFDLNLAQVIQ 134


>06_01_0367 -
           2636487-2636498,2636655-2636724,2636831-2636937,
           2637208-2637226,2637383-2637470,2638175-2638303,
           2638428-2638506,2639658-2639720,2640437-2640535,
           2641583-2641740,2642926-2643094,2643174-2643239
          Length = 352

 Score =  116 bits (280), Expect = 2e-26
 Identities = 53/101 (52%), Positives = 70/101 (69%)
 Frame = -1

Query: 628 RATTNEKIVLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIVTDT 449
           R  TN+ + LAS+++ + A++ QLSP     GI+ L A  F L CFQ+LTG KF  V +T
Sbjct: 29  RTDTNDSLRLASLWHSMHAISQQLSPTHGCEGIDLLQAHNFDLHCFQSLTGTKFFAVCET 88

Query: 448 NMQGTDVVLKRIYELYSDYALKNPFYSLEMPIRCELFDTSL 326
             Q  + +LK IYELY+D+ LKNPFY +EMPIRCELFD +L
Sbjct: 89  GAQNIETLLKVIYELYTDFVLKNPFYEMEMPIRCELFDLNL 129


>01_05_0102 -
           18131640-18131655,18132928-18133046,18133186-18133300,
           18134072-18134325
          Length = 167

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 21/59 (35%), Positives = 34/59 (57%)
 Frame = -1

Query: 526 SLTADTFKLSCFQTLTGVKFIIVTDTNMQGTDVVLKRIYELYSDYALKNPFYSLEMPIR 350
           S   +T+KL+  ++ +G+K I++T          LK IY LY +Y +KNP Y+   PI+
Sbjct: 105 SFKTNTYKLNFLESPSGIKLILITHPRTGDQRDTLKHIYNLYVEYVVKNPLYAPGTPIK 163


>12_02_0492 + 19668896-19669893,19670886-19670972,19671067-19671097
          Length = 371

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 698 VFRCSSCHWRSIY 736
           +FRCS+CHW  +Y
Sbjct: 248 LFRCSTCHWSRVY 260


>11_06_0370 +
           22768977-22769523,22769619-22770642,22770784-22771170,
           22771216-22771507
          Length = 749

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 511 TFKLSCFQTLTGVKFIIVTDTNMQGTDVVLKR 416
           + +LS F   + +KF+ + DT    T V+LKR
Sbjct: 382 SMRLSMFNDFSKLKFLAIADTRFASTIVMLKR 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,080,360
Number of Sequences: 37544
Number of extensions: 366221
Number of successful extensions: 797
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)