Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15d04
(829 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC010866-1|AAH10866.1| 219|Homo sapiens TRAPPC4 protein protein. 227 4e-59
AF151862-1|AAD34099.1| 219|Homo sapiens CGI-104 protein protein. 227 4e-59
AF105025-1|AAF21897.1| 219|Homo sapiens unknown protein. 227 4e-59
BC032717-1|AAH32717.1| 145|Homo sapiens trafficking protein par... 52 3e-06
AF129332-1|AAD44697.1| 145|Homo sapiens MUM2 protein. 52 3e-06
CR456859-1|CAG33140.1| 140|Homo sapiens ZNF547 protein. 37 0.10
BC052618-1|AAH52618.1| 140|Homo sapiens trafficking protein par... 37 0.10
BC032809-1|AAH32809.1| 140|Homo sapiens SEDLP protein protein. 37 0.10
BC016915-1|AAH16915.1| 140|Homo sapiens TRAPPC2 protein protein. 37 0.10
BC008889-1|AAH08889.1| 140|Homo sapiens SEDLP protein protein. 37 0.10
AF157065-1|AAD49845.1| 140|Homo sapiens sedlin protein. 37 0.10
AF058918-1|AAC14421.1| 140|Homo sapiens unknown protein. 37 0.10
AC003002-1|AAB80684.1| 140|Homo sapiens R29515_1 protein. 37 0.10
AF291676-1|AAG02469.1| 140|Homo sapiens MBP-1 interacting prote... 34 0.72
BC131534-1|AAI31535.1| 1386|Homo sapiens DEAH (Asp-Glu-Ala-Asp/H... 31 6.7
BC065278-1|AAH65278.1| 917|Homo sapiens DHX57 protein protein. 31 6.7
BC053623-1|AAH53623.1| 852|Homo sapiens DHX57 protein protein. 31 6.7
AF283512-1|AAM73547.1| 860|Homo sapiens putative DEAH-box RNA/D... 31 6.7
AC018693-2|AAY24256.1| 860|Homo sapiens unknown protein. 31 6.7
AB209249-1|BAD92486.1| 733|Homo sapiens DHX57 protein variant p... 31 6.7
AB065761-1|BAC05981.1| 314|Homo sapiens seven transmembrane hel... 30 8.9
>BC010866-1|AAH10866.1| 219|Homo sapiens TRAPPC4 protein protein.
Length = 219
Score = 227 bits (555), Expect = 4e-59
Identities = 104/180 (57%), Positives = 136/180 (75%)
Frame = -1
Query: 829 PXILNCSMKIKKVVVAFGQRDGINVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYPL 650
P L + ++V+VAFGQRDGI VGH +L++NG V GR T D ++V + + NYP+
Sbjct: 35 PLDLLLKLHDERVLVAFGQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPV 94
Query: 649 SLKFGRVRATTNEKIVLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVK 470
S++FGR R T+NEK++LASMF+ LFA+ SQLSP SSGIE L DTFKL C+QTLTG+K
Sbjct: 95 SIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIK 154
Query: 469 FIIVTDTNMQGTDVVLKRIYELYSDYALKNPFYSLEMPIRCELFDTSLHTLLELVEKSGT 290
F+++ D G D +L++IYE+YSD+ALKNPFYSLEMPIRCELFD +L LE+ EK+GT
Sbjct: 155 FVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAGT 214
>AF151862-1|AAD34099.1| 219|Homo sapiens CGI-104 protein protein.
Length = 219
Score = 227 bits (555), Expect = 4e-59
Identities = 104/180 (57%), Positives = 136/180 (75%)
Frame = -1
Query: 829 PXILNCSMKIKKVVVAFGQRDGINVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYPL 650
P L + ++V+VAFGQRDGI VGH +L++NG V GR T D ++V + + NYP+
Sbjct: 35 PLDLLLKLHDERVLVAFGQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPV 94
Query: 649 SLKFGRVRATTNEKIVLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVK 470
S++FGR R T+NEK++LASMF+ LFA+ SQLSP SSGIE L DTFKL C+QTLTG+K
Sbjct: 95 SIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIK 154
Query: 469 FIIVTDTNMQGTDVVLKRIYELYSDYALKNPFYSLEMPIRCELFDTSLHTLLELVEKSGT 290
F+++ D G D +L++IYE+YSD+ALKNPFYSLEMPIRCELFD +L LE+ EK+GT
Sbjct: 155 FVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAGT 214
>AF105025-1|AAF21897.1| 219|Homo sapiens unknown protein.
Length = 219
Score = 227 bits (555), Expect = 4e-59
Identities = 104/180 (57%), Positives = 136/180 (75%)
Frame = -1
Query: 829 PXILNCSMKIKKVVVAFGQRDGINVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYPL 650
P L + ++V+VAFGQRDGI VGH +L++NG V GR T D ++V + + NYP+
Sbjct: 35 PLDLLLKLHDERVLVAFGQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPV 94
Query: 649 SLKFGRVRATTNEKIVLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVK 470
S++FGR R T+NEK++LASMF+ LFA+ SQLSP SSGIE L DTFKL C+QTLTG+K
Sbjct: 95 SIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIK 154
Query: 469 FIIVTDTNMQGTDVVLKRIYELYSDYALKNPFYSLEMPIRCELFDTSLHTLLELVEKSGT 290
F+++ D G D +L++IYE+YSD+ALKNPFYSLEMPIRCELFD +L LE+ EK+GT
Sbjct: 155 FVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAGT 214
>BC032717-1|AAH32717.1| 145|Homo sapiens trafficking protein
particle complex 1 protein.
Length = 145
Score = 51.6 bits (118), Expect = 3e-06
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = -1
Query: 604 VLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIVTDTNMQGTDVV 425
++ M + + + S++SP+ G + +KL ++T TG+K ++ TD + V
Sbjct: 37 LMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDV 96
Query: 424 LKRIYE-LYSDYALKNPFYSLEMPIRCELFDTSL 326
L IY LY + +KNP L ++ ELF + L
Sbjct: 97 LHHIYSALYVELVVKNPLCPLGQTVQSELFRSRL 130
>AF129332-1|AAD44697.1| 145|Homo sapiens MUM2 protein.
Length = 145
Score = 51.6 bits (118), Expect = 3e-06
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = -1
Query: 604 VLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIVTDTNMQGTDVV 425
++ M + + + S++SP+ G + +KL ++T TG+K ++ TD + V
Sbjct: 37 LMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDV 96
Query: 424 LKRIYE-LYSDYALKNPFYSLEMPIRCELFDTSL 326
L IY LY + +KNP L ++ ELF + L
Sbjct: 97 LHHIYSALYVELVVKNPLCPLGQTVQSELFRSRL 130
>CR456859-1|CAG33140.1| 140|Homo sapiens ZNF547 protein.
Length = 140
Score = 36.7 bits (81), Expect = 0.10
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -1
Query: 520 TADTFK---LSCFQTLTGVKFIIVTDTNMQ-GTDVVLKRIYELYSDYALKNPFYSLEMPI 353
T D F +S F T ++FI++ D + G +Y+LY +++ NPFY PI
Sbjct: 63 TVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPI 121
Query: 352 RCELFDTSLHTL 317
R FD + L
Sbjct: 122 RSSAFDRKVQFL 133
>BC052618-1|AAH52618.1| 140|Homo sapiens trafficking protein
particle complex 2 protein.
Length = 140
Score = 36.7 bits (81), Expect = 0.10
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -1
Query: 520 TADTFK---LSCFQTLTGVKFIIVTDTNMQ-GTDVVLKRIYELYSDYALKNPFYSLEMPI 353
T D F +S F T ++FI++ D + G +Y+LY +++ NPFY PI
Sbjct: 63 TVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPI 121
Query: 352 RCELFDTSLHTL 317
R FD + L
Sbjct: 122 RSSAFDRKVQFL 133
>BC032809-1|AAH32809.1| 140|Homo sapiens SEDLP protein protein.
Length = 140
Score = 36.7 bits (81), Expect = 0.10
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -1
Query: 520 TADTFK---LSCFQTLTGVKFIIVTDTNMQ-GTDVVLKRIYELYSDYALKNPFYSLEMPI 353
T D F +S F T ++FI++ D + G +Y+LY +++ NPFY PI
Sbjct: 63 TVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPI 121
Query: 352 RCELFDTSLHTL 317
R FD + L
Sbjct: 122 RSSAFDRKVQFL 133
>BC016915-1|AAH16915.1| 140|Homo sapiens TRAPPC2 protein protein.
Length = 140
Score = 36.7 bits (81), Expect = 0.10
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -1
Query: 520 TADTFK---LSCFQTLTGVKFIIVTDTNMQ-GTDVVLKRIYELYSDYALKNPFYSLEMPI 353
T D F +S F T ++FI++ D + G +Y+LY +++ NPFY PI
Sbjct: 63 TVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPI 121
Query: 352 RCELFDTSLHTL 317
R FD + L
Sbjct: 122 RSSAFDRKVQFL 133
>BC008889-1|AAH08889.1| 140|Homo sapiens SEDLP protein protein.
Length = 140
Score = 36.7 bits (81), Expect = 0.10
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -1
Query: 520 TADTFK---LSCFQTLTGVKFIIVTDTNMQ-GTDVVLKRIYELYSDYALKNPFYSLEMPI 353
T D F +S F T ++FI++ D + G +Y+LY +++ NPFY PI
Sbjct: 63 TVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPI 121
Query: 352 RCELFDTSLHTL 317
R FD + L
Sbjct: 122 RSSAFDRKVQFL 133
>AF157065-1|AAD49845.1| 140|Homo sapiens sedlin protein.
Length = 140
Score = 36.7 bits (81), Expect = 0.10
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -1
Query: 520 TADTFK---LSCFQTLTGVKFIIVTDTNMQ-GTDVVLKRIYELYSDYALKNPFYSLEMPI 353
T D F +S F T ++FI++ D + G +Y+LY +++ NPFY PI
Sbjct: 63 TVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPI 121
Query: 352 RCELFDTSLHTL 317
R FD + L
Sbjct: 122 RSSAFDRKVQFL 133
>AF058918-1|AAC14421.1| 140|Homo sapiens unknown protein.
Length = 140
Score = 36.7 bits (81), Expect = 0.10
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -1
Query: 520 TADTFK---LSCFQTLTGVKFIIVTDTNMQ-GTDVVLKRIYELYSDYALKNPFYSLEMPI 353
T D F +S F T ++FI++ D + G +Y+LY +++ NPFY PI
Sbjct: 63 TVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPI 121
Query: 352 RCELFDTSLHTL 317
R FD + L
Sbjct: 122 RSSAFDRKVQFL 133
>AC003002-1|AAB80684.1| 140|Homo sapiens R29515_1 protein.
Length = 140
Score = 36.7 bits (81), Expect = 0.10
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -1
Query: 520 TADTFK---LSCFQTLTGVKFIIVTDTNMQ-GTDVVLKRIYELYSDYALKNPFYSLEMPI 353
T D F +S F T ++FI++ D + G +Y+LY +++ NPFY PI
Sbjct: 63 TVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPI 121
Query: 352 RCELFDTSLHTL 317
R FD + L
Sbjct: 122 RSSAFDRKVQFL 133
>AF291676-1|AAG02469.1| 140|Homo sapiens MBP-1 interacting
protein-2A protein.
Length = 140
Score = 33.9 bits (74), Expect = 0.72
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -1
Query: 520 TADTFK---LSCFQTLTGVKFIIVTDTNMQ-GTDVVLKRIYELYSDYALKNPFYSLEMPI 353
T D F +S F T ++FI++ D + G +Y+ Y +++ NPFY PI
Sbjct: 63 TVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDPYIKFSM-NPFYEPNSPI 121
Query: 352 RCELFDTSLHTL 317
R FD + L
Sbjct: 122 RSSAFDRKVQFL 133
>BC131534-1|AAI31535.1| 1386|Homo sapiens DEAH (Asp-Glu-Ala-Asp/His)
box polypeptide 57 protein.
Length = 1386
Score = 30.7 bits (66), Expect = 6.7
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -3
Query: 206 FSTSHYEFQLDKKKICAIPEINGVPRDGLCLRCGI 102
F++ HY QL K+++ PEI VP + LCLR I
Sbjct: 977 FTSHHYNHQLLKQQL---PEIQRVPLEQLCLRIKI 1008
>BC065278-1|AAH65278.1| 917|Homo sapiens DHX57 protein protein.
Length = 917
Score = 30.7 bits (66), Expect = 6.7
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -3
Query: 206 FSTSHYEFQLDKKKICAIPEINGVPRDGLCLRCGI 102
F++ HY QL K+++ PEI VP + LCLR I
Sbjct: 508 FTSHHYNHQLLKQQL---PEIQRVPLEQLCLRIKI 539
>BC053623-1|AAH53623.1| 852|Homo sapiens DHX57 protein protein.
Length = 852
Score = 30.7 bits (66), Expect = 6.7
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -3
Query: 206 FSTSHYEFQLDKKKICAIPEINGVPRDGLCLRCGI 102
F++ HY QL K+++ PEI VP + LCLR I
Sbjct: 443 FTSHHYNHQLLKQQL---PEIQRVPLEQLCLRIKI 474
>AF283512-1|AAM73547.1| 860|Homo sapiens putative DEAH-box RNA/DNA
helicase protein.
Length = 860
Score = 30.7 bits (66), Expect = 6.7
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -3
Query: 206 FSTSHYEFQLDKKKICAIPEINGVPRDGLCLRCGI 102
F++ HY QL K+++ PEI VP + LCLR I
Sbjct: 451 FTSHHYNHQLLKQQL---PEIQRVPLEQLCLRIKI 482
>AC018693-2|AAY24256.1| 860|Homo sapiens unknown protein.
Length = 860
Score = 30.7 bits (66), Expect = 6.7
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -3
Query: 206 FSTSHYEFQLDKKKICAIPEINGVPRDGLCLRCGI 102
F++ HY QL K+++ PEI VP + LCLR I
Sbjct: 451 FTSHHYNHQLLKQQL---PEIQRVPLEQLCLRIKI 482
>AB209249-1|BAD92486.1| 733|Homo sapiens DHX57 protein variant
protein.
Length = 733
Score = 30.7 bits (66), Expect = 6.7
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -3
Query: 206 FSTSHYEFQLDKKKICAIPEINGVPRDGLCLRCGI 102
F++ HY QL K+++ PEI VP + LCLR I
Sbjct: 369 FTSHHYNHQLLKQQL---PEIQRVPLEQLCLRIKI 400
>AB065761-1|BAC05981.1| 314|Homo sapiens seven transmembrane helix
receptor protein.
Length = 314
Score = 30.3 bits (65), Expect = 8.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 414 SMSYIQTMHLRIHSTHSRCQ*DVNCSTHL 328
S ++I T LRIHS RC+ CS+HL
Sbjct: 217 SYAFILTSILRIHSKKGRCKAFSTCSSHL 245
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,241,153
Number of Sequences: 237096
Number of extensions: 2162329
Number of successful extensions: 3443
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3441
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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