Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d04
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical pr...   168   5e-42
Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AB070577-1|BAC66472.1|  396|Caenorhabditis elegans L-3,4-dihydro...    29   4.1  
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p...    29   5.4  
U37548-4|AAA79200.2|  373|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical
           protein F36D4.2 protein.
          Length = 224

 Score =  168 bits (408), Expect = 5e-42
 Identities = 80/175 (45%), Positives = 119/175 (68%), Gaps = 4/175 (2%)
 Frame = -1

Query: 799 KKVVVAFGQRDGINVGHVLLSVNGSPVTGRTTE---DNRDVFDIIEAKENYPLSLKFGRV 629
           +K VV FG++DGI + + + SVNG  V+G   +      +V + ++ +++YP+++KF   
Sbjct: 47  QKAVVVFGEKDGIKLRYYVKSVNGETVSGTRLQLGAQQVNVLEYLQEEDHYPVTVKFAAP 106

Query: 628 RATTNEKIVLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIVTDT 449
             +TNEKI+L+SMF+ LF +A QLSP  KSSG+E L    FKL C Q+ TGVKF+++T  
Sbjct: 107 TVSTNEKIILSSMFHSLFTIAVQLSPCQKSSGVEVLETTQFKLFCLQSRTGVKFVVITSA 166

Query: 448 NMQ-GTDVVLKRIYELYSDYALKNPFYSLEMPIRCELFDTSLHTLLELVEKSGTA 287
                 D +L ++YELY+D+ALKNPFYS++MPIR + FD ++ TLLE  EK+  A
Sbjct: 167 ASNIAADSLLSKMYELYTDFALKNPFYSIDMPIRAQKFDEAIKTLLERAEKNNGA 221


>Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical
           protein C06H5.7 protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 201 RKWLIMVLTCANLKVRLATLLILLYNYKLAV 293
           RKW  M   C NL +   T+L+L+ +Y LAV
Sbjct: 145 RKWFTM-RRCVNLMIISWTILVLMVSYTLAV 174


>AB070577-1|BAC66472.1|  396|Caenorhabditis elegans
           L-3,4-dihydroxyphenylalanine receptorprotein.
          Length = 396

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 201 RKWLIMVLTCANLKVRLATLLILLYNYKLAV 293
           RKW  M   C NL +   T+L+L+ +Y LAV
Sbjct: 145 RKWFTM-RRCVNLMIISWTILVLMVSYTLAV 174


>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
            protein C06A5.1 protein.
          Length = 1932

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 440  LHISVCYYYKFYTSECLKTRQLECVS 517
            LH S+C Y+  Y   CLK  Q++ ++
Sbjct: 1055 LHTSLCEYFLQYVDTCLKNHQIKNIT 1080


>U37548-4|AAA79200.2|  373|Caenorhabditis elegans Hypothetical
           protein C54D2.1 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 705 VVLPVTGDPFTDSNTCPTFIPSLWPNATTT 794
           V +PV   P T + T PT +P+  P ATTT
Sbjct: 118 VPVPVPTAPATVAPTAPTDLPTPAPEATTT 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,742,997
Number of Sequences: 27780
Number of extensions: 370679
Number of successful extensions: 1102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)