Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15d02
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 354 9e-99
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 67 3e-12
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 53 4e-08
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 32 0.076
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 30 0.31
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 29 0.94
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 27 2.9
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 5.0
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 5.0
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 26 6.6
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 25 8.8
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 8.8
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 354 bits (870), Expect = 9e-99
Identities = 172/214 (80%), Positives = 192/214 (89%)
Frame = -2
Query: 751 TQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPA 572
TQAGSEVSALLGRIPSAVGYQPTLATDMG MQERITTTKKGSITSVQA+YVPADDLTDPA
Sbjct: 308 TQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTTKKGSITSVQAVYVPADDLTDPA 367
Query: 571 PATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDY 392
PATTFAHLDATTVLSR+I+ELGIYPAVDPLDS SR+MDP I+G EHYN+A VQ++LQ+Y
Sbjct: 368 PATTFAHLDATTVLSRSISELGIYPAVDPLDSKSRMMDPRILGEEHYNLAGSVQQMLQEY 427
Query: 391 KSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGF 212
KSLQDIIAILGMDELSE DKLTV RARK+QRFLSQPF VAEVFTG G+LV L++TI+ F
Sbjct: 428 KSLQDIIAILGMDELSEADKLTVERARKVQRFLSQPFAVAEVFTGIEGRLVSLKDTIRSF 487
Query: 211 SKILAGDYDHLPEVAFYMVGPIEEVVAKAETLAK 110
+IL G +D LPE AFYMVG I++ V KAE +A+
Sbjct: 488 KEILEGKHDSLPESAFYMVGSIDDAVKKAEKIAQ 521
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 66.9 bits (156), Expect = 3e-12
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 7/157 (4%)
Frame = -2
Query: 736 EVSALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPAT 563
EVSA +P GY + TD+ T+ ER + GSIT + + +P DD+T P P
Sbjct: 287 EVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDL 346
Query: 562 TFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQD 395
T + + R + IYP ++ L S SR+M I +H +V+ + +
Sbjct: 347 TGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSNQLYAMYAI 406
Query: 394 YKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 287
+ + +++G + LS+ED+L + K ++ F+SQ
Sbjct: 407 GRDAASMKSVVGEEALSQEDRLALEFLGKFEKTFISQ 443
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 53.2 bits (122), Expect = 4e-08
Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Frame = -2
Query: 748 QAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI-------TTTKKGSITSVQAIYVPAD 590
+A E+S L +P+ GY L + + ER + ++G+++ V A+ P
Sbjct: 364 EALREISGRLAEMPADSGYPAYLGAKLASFYERAGRARCLGSPDREGTVSIVGAVSPPGG 423
Query: 589 DLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH----YNVA 422
D +DP + T + L + +A+ +P+++ S S+ ++ E +N
Sbjct: 424 DFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINTSLSYSKYINALQPWYEERVPGFNTL 483
Query: 421 RG-VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 287
R +++I+Q S+ +II ++G LSE DK+T+ A I+ FL Q
Sbjct: 484 RDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTLDIAGIIKNDFLQQ 530
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 32.3 bits (70), Expect = 0.076
Identities = 29/116 (25%), Positives = 48/116 (41%)
Frame = -2
Query: 631 GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPN 452
GS+T++ I D++ P + D L + GI PA++ S SR+
Sbjct: 347 GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVGLSVSRVGSAA 406
Query: 451 IIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQP 284
+ A VA ++ L Y+ + A G D L + T+ R ++ L QP
Sbjct: 407 QVKAMK-QVAGQIKLFLAQYREVAS-FAQFGSD-LDAGTRATLDRGLRLTELLKQP 459
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -2
Query: 616 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA--VDPLDSTSRIMDPNIIG 443
+ I VP D P F + SR +A G P+ V+P +S ++I+D I
Sbjct: 91 IAIIGVPFDTAVSHRPGARFGPKGIRSASSRQMAIRGFNPSLNVNPYESWAKILDCGDIP 150
Query: 442 AEHYNVARGVQKILQDYKSL 383
Y+ V+++ + Y L
Sbjct: 151 VSSYDNQLAVRQMTEGYIDL 170
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.94
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = -2
Query: 658 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 536
QE + +G+ T ++A+++P+ + P P+ + A +
Sbjct: 78 QEAVVLPSQGNFTQLEALFIPSKSIKAPTPSRLLREIAAVS 118
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 506 TQFSNGSRKYSGSIQVSKSGGWSRISQVISWYINSLHRCDGTFLGG 643
TQ SR S + S + ++WY++SLHR G + G
Sbjct: 43 TQTEANSRLASQRVHRPNSPHLTIYEPQLTWYLSSLHRITGCVVAG 88
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 485 RIHSWVDTQFSNGSRKYSGSIQVSK 559
R+ S DT F N KY ++Q+SK
Sbjct: 1331 RVESSSDTVFENTDLKYDNNVQMSK 1355
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 640 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 503
TK G++ + V + DPA A +L+ +V RA A LG+
Sbjct: 439 TKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGL 484
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 181 LPEVAFYMVGPIEEVVAKAETLAKNA*TGQYCVIILKSCRVIY*K 47
LP + +Y+ GP + V AK+ + N +C+ +++S R ++ K
Sbjct: 373 LPPIDYYLNGPYDNVEAKSALM--NI-YSSHCITLIESVRYMHLK 414
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 231 SSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSS 356
S G P+ S CE N +R R T ++ SSD S+
Sbjct: 130 SGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAST 171
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 8.8
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 584 QVISWYINSLHRCDG 628
+ +SW++N+LH C G
Sbjct: 265 EFLSWFLNTLHNCLG 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,246
Number of Sequences: 5004
Number of extensions: 66752
Number of successful extensions: 182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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