Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d02
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   386   e-107
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    64   1e-10
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    64   1e-10
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    62   5e-10
Z82288-5|CAB05324.1|  380|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF098994-4|AAO21390.1|  606|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z93391-7|CAB07685.3|  405|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U23513-1|ABD94110.1|  294|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    28   6.2  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   8.2  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  386 bits (949), Expect = e-107
 Identities = 188/214 (87%), Positives = 199/214 (92%)
 Frame = -2

Query: 751 TQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPA 572
           TQAGSEVSALLGRIPSAVGYQPTLATDMG+MQERITTTKKGSITSVQAIYVPADDLTDPA
Sbjct: 321 TQAGSEVSALLGRIPSAVGYQPTLATDMGSMQERITTTKKGSITSVQAIYVPADDLTDPA 380

Query: 571 PATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDY 392
           PATTFAHLDATTVLSR IAEL IYPAVDPLDSTSRIMDPN++G  HY++ARGVQKILQDY
Sbjct: 381 PATTFAHLDATTVLSRGIAELAIYPAVDPLDSTSRIMDPNVVGQNHYDIARGVQKILQDY 440

Query: 391 KSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGF 212
           KSLQDIIAILGMDELSEEDKLTV+RARKIQRFLSQPFQVAEVFTGH GK V LEETI+GF
Sbjct: 441 KSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHQGKFVSLEETIRGF 500

Query: 211 SKILAGDYDHLPEVAFYMVGPIEEVVAKAETLAK 110
           + IL G+ DHLPEVAFYM G I++V  KAE LAK
Sbjct: 501 TMILKGELDHLPEVAFYMQGGIDDVFKKAEELAK 534


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
 Frame = -2

Query: 748 QAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK--KGSITSVQAIYVPADDLTDP 575
           +A  E+SA    +P   G+   + TD+ T+ ER    K  +GSIT +  + +P +D+T P
Sbjct: 297 EALREISAAREEVPGRRGFPGYMYTDLATIYERAGRVKGREGSITQIPILTMPNNDITHP 356

Query: 574 APATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM----DPNIIGAEHYNVARGVQK 407
            P  T    +    + + + +  IYP +D L S SR+M       +   +H +++  +  
Sbjct: 357 IPDLTGYITEGQIYIDKQLHKRLIYPPIDVLPSLSRLMKSAVGEGMTREDHSDLSNQLYA 416

Query: 406 ILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 287
                K +Q + A++G++ LS +D L +    K ++ F++Q
Sbjct: 417 CYAMGKDVQAMKAVVGVEALSPDDLLYLEFLAKFEKNFIAQ 457


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 7/161 (4%)
 Frame = -2

Query: 748 QAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDP 575
           +A  EVSA    +P   G+   + TD+ T+ ER      + GSIT +  + +P DD+T P
Sbjct: 285 EALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRDGSITQIPILTMPNDDITHP 344

Query: 574 APATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQK 407
            P  T    +    + R +    IYP ++ L S SR+M   I       +H +V+  +  
Sbjct: 345 IPDLTGYITEGQIYVDRQLHNRLIYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYA 404

Query: 406 ILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 287
                K +Q + A++G + LS +D L +    K ++ F++Q
Sbjct: 405 CYAIGKDVQAMKAVVGEEALSSDDLLYLEFLTKFEKNFITQ 445


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 14/202 (6%)
 Frame = -2

Query: 748 QAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-------KGSITSVQAIYVPAD 590
           +A  E+S  LG +P+  GY   LA  + +  ER    K       +GS+T V A+  P  
Sbjct: 345 EALREISGRLGEMPADSGYPAYLAARLASFYERAGRVKCLGSPEREGSVTIVGAVSPPGG 404

Query: 589 DLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM-------DPNIIGAEHY 431
           D  DP  + T   +     L + +A+   +P+++ L S S  M       + N    E  
Sbjct: 405 DFADPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSEYMRALEEFYEKNY--PEFV 462

Query: 430 NVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHA 251
           ++    ++ILQ+ + L +I+ ++G   L+E DK+T+    ++ + +   F     +T + 
Sbjct: 463 SLRTKCKEILQEEEDLSEIVQLVGKASLAESDKVTL----EVAKIIKDDFLQQNGYTKY- 517

Query: 250 GKLVPLEETIKGFSKILAGDYD 185
            +  P  +T+ G  K + G YD
Sbjct: 518 DRFCPFYKTV-GMLKNMIGFYD 538


>Z82288-5|CAB05324.1|  380|Caenorhabditis elegans Hypothetical
           protein ZK896.7 protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -2

Query: 694 YQPTLATDMG--TMQERITTTKKGSITSVQ-AIYVPADDLTDPAPATTFAHLDATTV 533
           Y PT  T     T+    TTT+  + T+V+      A  +T P P TT +    TTV
Sbjct: 146 YDPTATTSAAPTTIPPTTTTTRAPTTTTVRKTTQTTATTMTTPKPTTTVSTTTTTTV 202


>AF098994-4|AAO21390.1|  606|Caenorhabditis elegans Hypothetical
           protein T06A4.1b protein.
          Length = 606

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 26/112 (23%), Positives = 45/112 (40%)
 Frame = -2

Query: 676 TDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 497
           T+  T +E  TTT +   T+      P +  T+P+P T  A   +TT  +   +E     
Sbjct: 482 TEAPTTEEPTTTTTEEPTTTTTT-EEPTEAPTEPSPTTVEATEASTTPEASTSSETSTTE 540

Query: 496 AVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSE 341
             +P   TS  + P     E   +         DY  L  ++ +   D++S+
Sbjct: 541 NSEPNQKTSTPVAPEASTVEEETITPIKCVDYGDYCRLWGVLQLCYRDQVSK 592


>Z93391-7|CAB07685.3|  405|Caenorhabditis elegans Hypothetical
           protein W04G5.9 protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/77 (27%), Positives = 32/77 (41%)
 Frame = -2

Query: 685 TLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELG 506
           T+AT   +     TTTK  + T++    +     T P P TT   +  TT  +R IA   
Sbjct: 173 TVATTKTSPSTLRTTTKPPTTTTIATTRITTKTTTSPPPFTT--TVTTTTSAARTIATTT 230

Query: 505 IYPAVDPLDSTSRIMDP 455
               V P+    + + P
Sbjct: 231 PIKTVPPVKVFGKAIKP 247


>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/60 (30%), Positives = 23/60 (38%)
 Frame = -2

Query: 688 PTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAEL 509
           PT  T   T  +  TTT   +  +      P    T PAP TT      TT+ +   A L
Sbjct: 419 PTTTTTTTTTPKPTTTTTTTTTPAPTTTQKPTTTTTTPAPTTTSTTSIPTTIATTTAAPL 478


>U23513-1|ABD94110.1|  294|Caenorhabditis elegans Hypothetical
           protein D2021.4a protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -2

Query: 472 SRIMDPNIIGAEHYN-VARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRF 296
           ++I D N+I + HYN V+ G  + L D K ++ +  +   D   E  K+ +A  +   +F
Sbjct: 56  NKIKDENVIFSMHYNFVSAGDPRKLIDIK-IEKVGNVYTADVYHENKKIGLAHIKTDSKF 114

Query: 295 LSQ-PF 281
           L + PF
Sbjct: 115 LRKIPF 120


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 525 EPLLNWVSTQLWILLTQHPVSWTPI-LLELSTTM-LHVEFRK 406
           + L N++  Q W++L  HP  +TP+   EL+  + L  EFRK
Sbjct: 20  QTLHNYIGEQ-WLMLFSHPADFTPVCTTELAELVKLAPEFRK 60


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/80 (27%), Positives = 39/80 (48%)
 Frame = -2

Query: 733  VSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFA 554
            VS+   ++P     QPT+++++G + +   T K+ +I  V+    P+     P   T   
Sbjct: 1332 VSSFAPKVPETKINQPTISSNIGDLSK---TEKESTIPRVEV--TPS---ASPESTTVTE 1383

Query: 553  HLDATTVLSRAIAELGIYPA 494
            H+DA T  S  I  +G  P+
Sbjct: 1384 HIDAET-NSATIPTIGTPPS 1402


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,488,366
Number of Sequences: 27780
Number of extensions: 386841
Number of successful extensions: 1019
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)