Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d01
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   4.4  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    26   5.8  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    26   7.6  

>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 703 R*KTGPEESCTRKERNHRKKRQESQKKEG 617
           R KT  E+   +KER   +K+Q+  KK+G
Sbjct: 176 RVKTKKEKEREKKEREKLRKKQQQAKKKG 204


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 568 ICWC*KGTYSCSRIC 524
           +C C K TY+CS+ C
Sbjct: 232 VCGCYKNTYTCSQTC 246


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 564 AGVKKEPTPAPESAPKPQ 511
           + V K P+P P+SAP+ Q
Sbjct: 332 SSVTKSPSPTPQSAPRAQ 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,181,808
Number of Sequences: 5004
Number of extensions: 14771
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)