Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15d01
         (838 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003645-1|AAO39649.1|  234|Drosophila melanogaster AT13908p pro...    29   6.0  
AE014296-352|AAS64934.1| 3966|Drosophila melanogaster CG15804-PB...    29   6.0  
AE014296-351|AAF47564.1| 3868|Drosophila melanogaster CG15804-PA...    29   6.0  

>BT003645-1|AAO39649.1|  234|Drosophila melanogaster AT13908p
           protein.
          Length = 234

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 591 LFQYHHHYHPSFFWLSCLFF 650
           L  +HHH  P  FWLS  FF
Sbjct: 71  LHDWHHHGKPPTFWLSGFFF 90


>AE014296-352|AAS64934.1| 3966|Drosophila melanogaster CG15804-PB,
            isoform B protein.
          Length = 3966

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 591  LFQYHHHYHPSFFWLSCLFF 650
            L  +HHH  P  FWLS  FF
Sbjct: 3803 LHDWHHHGKPPTFWLSGFFF 3822


>AE014296-351|AAF47564.1| 3868|Drosophila melanogaster CG15804-PA,
            isoform A protein.
          Length = 3868

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 591  LFQYHHHYHPSFFWLSCLFF 650
            L  +HHH  P  FWLS  FF
Sbjct: 3705 LHDWHHHGKPPTFWLSGFFF 3724


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,163,552
Number of Sequences: 53049
Number of extensions: 191874
Number of successful extensions: 1707
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1681
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3983256888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)