Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c24
         (162 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    23   4.1  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   4.1  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    23   5.4  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    23   5.4  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    23   7.2  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   7.2  

>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 94  RVINT*YTLL*SYFNITI*FPVQN 23
           +VINT YT L    ++TI FP+ N
Sbjct: 63  KVINTTYTFLYLRNSLTITFPLLN 86


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +3

Query: 66  SSVYYVFITLVNCEAFFC 119
           ++ +++F+TL+ C   FC
Sbjct: 156 ANAFFLFVTLLQCIPLFC 173


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -2

Query: 128 NLTTKKSFTIYESYKYIIHTTVIIF*HNNIIS 33
           N+   K F +  S +Y+++ T +   +NN ++
Sbjct: 508 NIANNKLFFLPHSTRYLVNLTYLDLSYNNFVT 539


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 24   FCTGNYIVMLKYDHSSVYYVFITLVNCE 107
            FC  N IVM   + S      I L NCE
Sbjct: 971  FCFNNLIVMNSQNISESSITSILLSNCE 998


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 137 NIYNLTTKKSFTIYESYKYIIHTTVIIF 54
           N YN   +    +    KY+I T V+IF
Sbjct: 93  NFYNYFDQALADLNSVVKYVIETIVLIF 120


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 137 NIYNLTTKKSFTIYESYKYIIHTTVIIF 54
           N YN   +    +    KY+I T V+IF
Sbjct: 93  NFYNYFDQALADLNSVVKYVIETIVLIF 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 593,138
Number of Sequences: 5004
Number of extensions: 7777
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)