Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c24
         (162 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   3.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    19   4.2  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    19   4.2  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    19   4.2  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    19   4.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   5.6  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = +2

Query: 23  VLYWKLYCYVKI*SQ*CVLCIYNSRKL*SFFLWLSY 130
           ++ W  +  V + S  C  CI+  + + +   WL +
Sbjct: 345 IICWLPFFVVNLWSGFCSQCIWQEKIVFAAVTWLGW 380


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 20  LVLYWKLYCYVK 55
           L +Y +LYCY +
Sbjct: 209 LGIYCRLYCYAQ 220


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 119 TKKSFTIYESYKYIIHTTV 63
           T K+ T    Y YI HT V
Sbjct: 164 TGKNITTPWDYYYIYHTLV 182


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 119 TKKSFTIYESYKYIIHTTV 63
           T K+ T    Y YI HT V
Sbjct: 179 TGKNITTPWDYYYIYHTLV 197


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 119 TKKSFTIYESYKYIIHTTV 63
           T K+ T    Y YI HT V
Sbjct: 67  TGKNITTPWDYYYIYHTLV 85


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 27  CTGNYIVMLKYDHSSVYYV 83
           C G+    LK DH   Y V
Sbjct: 192 CVGSAYTPLKEDHDDHYGV 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,671
Number of Sequences: 438
Number of extensions: 640
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 33
effective length of database: 131,889
effective search space used:  2637780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)