Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c22
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z81502-6|CAB04109.3|  345|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical...    27   9.4  

>AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.2 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 361 LYIIVIDPLVIYLIP-FTQFLFLMLSFLRFQEIEN 462
           L I++  P+++Y +P +TQF+F    FL F+ + N
Sbjct: 21  LSIVIFLPILVYFLPRYTQFIF----FLNFRRLPN 51


>Z81502-6|CAB04109.3|  345|Caenorhabditis elegans Hypothetical
           protein F14B6.6a protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 484 YRQYSQRCFQFLETEEKKALRKE 416
           YR YSQR  +FL  E++  L++E
Sbjct: 19  YRYYSQRTMEFLIEEDQMCLQRE 41


>AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical
           protein Y71G12B.25 protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 81  FIVSFVLSSSDIPYILYFVPT 19
           FIV FVL+ + IP +++ +PT
Sbjct: 166 FIVGFVLAGTMIPVVMFLLPT 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,152,235
Number of Sequences: 27780
Number of extensions: 293474
Number of successful extensions: 652
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)