Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15c19
(817 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P55072 Cluster: Transitional endoplasmic reticulum ATPa... 141 2e-32
UniRef50_A4ICJ9 Cluster: Transitional endoplasmic reticulum ATPa... 95 2e-18
UniRef50_Q1JSD1 Cluster: Transitional endoplasmic reticulum ATPa... 66 1e-09
UniRef50_A7AVE1 Cluster: Cell division cycle protein ATPase, put... 64 3e-09
UniRef50_Q4MZM6 Cluster: Cell division cycle protein 48, putativ... 60 9e-08
UniRef50_Q4UBT9 Cluster: Cell divison cycle CDC48 homologue, put... 49 2e-04
UniRef50_A5KAB5 Cluster: Cell division cycle ATPase, putative; n... 47 5e-04
UniRef50_Q4YQQ6 Cluster: Cell division cycle ATPase, putative; n... 44 0.003
UniRef50_Q7QWL6 Cluster: GLP_762_31096_33708; n=1; Giardia lambl... 42 0.019
UniRef50_Q8TA24 Cluster: Putative transitional endoplasmic retic... 40 0.057
UniRef50_Q6A846 Cluster: Putative ATP-dependent DNA helicase; n=... 36 0.92
UniRef50_A1SE84 Cluster: NADH:flavin oxidoreductase/NADH oxidase... 36 1.6
UniRef50_Q00T93 Cluster: 26S proteasome regulatory complex, ATPa... 36 1.6
UniRef50_A0EEE7 Cluster: Chromosome undetermined scaffold_91, wh... 35 2.1
UniRef50_Q803I9 Cluster: Nuclear VCP-like; n=4; Deuterostomia|Re... 34 3.7
UniRef50_A4JRK0 Cluster: Transcriptional regulator, Fis family; ... 34 4.9
UniRef50_Q82QP8 Cluster: Putative uncharacterized protein; n=1; ... 33 6.5
UniRef50_A5NV47 Cluster: LigA; n=1; Methylobacterium sp. 4-46|Re... 33 6.5
UniRef50_Q1ENB0 Cluster: Isopentenyl-diphosphate delta-isomerase... 33 6.5
UniRef50_O97230 Cluster: Putative uncharacterized protein MAL3P2... 33 6.5
UniRef50_A7CRG4 Cluster: D-isomer specific 2-hydroxyacid dehydro... 33 8.6
UniRef50_Q4WYG4 Cluster: C6 transcription factor, putative; n=3;... 33 8.6
>UniRef50_P55072 Cluster: Transitional endoplasmic reticulum ATPase
(TER ATPase) (15S Mg(2+)- ATPase p97 subunit); n=169;
Eukaryota|Rep: Transitional endoplasmic reticulum ATPase
(TER ATPase) (15S Mg(2+)- ATPase p97 subunit) - Homo
sapiens (Human)
Length = 806
Score = 141 bits (342), Expect = 2e-32
Identities = 76/122 (62%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
LTEICQRACKLAIR++IE+EI RER R M+++E+DPVPEI R HFEEAM+FAR
Sbjct: 687 LTEICQRACKLAIRESIESEIRRERERQTNPS--AMEVEEDDPVPEIRRDHFEEAMRFAR 744
Query: 635 RSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP--TFQEEGGDDD 462
RSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+ G + E DDD
Sbjct: 745 RSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDD 803
Query: 461 LY 456
LY
Sbjct: 804 LY 805
>UniRef50_A4ICJ9 Cluster: Transitional endoplasmic reticulum ATPase,
putative; n=2; Leishmania|Rep: Transitional endoplasmic
reticulum ATPase, putative - Leishmania infantum
Length = 690
Score = 95.1 bits (226), Expect = 2e-18
Identities = 49/87 (56%), Positives = 61/87 (70%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
L+ ICQRACK+AIR++I EI E + D+D PVPEI+RAH EEAM+ AR
Sbjct: 581 LSGICQRACKMAIRESINKEIQLEELKKIGQLDENADID---PVPEITRAHVEEAMRGAR 637
Query: 635 RSVSDNDIRKYEMFAQTLQQSRGFGTN 555
RSVSD DIR+Y+MF +LQQSR FG +
Sbjct: 638 RSVSDADIRRYDMFKTSLQQSRTFGAS 664
>UniRef50_Q1JSD1 Cluster: Transitional endoplasmic reticulum ATPase;
n=1; Toxoplasma gondii|Rep: Transitional endoplasmic
reticulum ATPase - Toxoplasma gondii
Length = 792
Score = 65.7 bits (153), Expect = 1e-09
Identities = 35/82 (42%), Positives = 52/82 (63%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
+TEICQRA K A+R++I+AE+ R R + E+DPVP IS+ HF+EA K AR
Sbjct: 686 ITEICQRAAKNAVRESIQAEVARGRP---------LAEGEKDPVPFISKKHFDEAFKGAR 736
Query: 635 RSVSDNDIRKYEMFAQTLQQSR 570
RSV ++ ++ Y F +++ R
Sbjct: 737 RSVPEDMVKVYTQFNSMMKRRR 758
>UniRef50_A7AVE1 Cluster: Cell division cycle protein ATPase,
putative; n=1; Babesia bovis|Rep: Cell division cycle
protein ATPase, putative - Babesia bovis
Length = 922
Score = 64.5 bits (150), Expect = 3e-09
Identities = 37/83 (44%), Positives = 47/83 (56%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
+ EIC RA + AIR++IE EI R R + EEDPVP I+ HF AM AR
Sbjct: 849 IAEICHRAAREAIRESIEHEIKRGRR---------LKEGEEDPVPYITNEHFRVAMANAR 899
Query: 635 RSVSDNDIRKYEMFAQTLQQSRG 567
+SV DI++YE F + L S G
Sbjct: 900 KSVRKEDIKRYEQFKKKLASSTG 922
>UniRef50_Q4MZM6 Cluster: Cell division cycle protein 48, putative;
n=1; Theileria parva|Rep: Cell division cycle protein 48,
putative - Theileria parva
Length = 954
Score = 59.7 bits (138), Expect = 9e-08
Identities = 31/74 (41%), Positives = 47/74 (63%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
+ EIC RA + AIR++IE EI R+R ++ E+DPVP I+ HF+ A++ +R
Sbjct: 884 IAEICHRAAREAIRESIEEEIKRKRP---------LEKGEKDPVPFITNKHFQVALRNSR 934
Query: 635 RSVSDNDIRKYEMF 594
+SV +DI+ YE F
Sbjct: 935 KSVEQSDIQLYESF 948
>UniRef50_Q4UBT9 Cluster: Cell divison cycle CDC48 homologue,
putative or transitional endoplasmic reticulum ATPase,
putative; n=1; Theileria annulata|Rep: Cell divison
cycle CDC48 homologue, putative or transitional
endoplasmic reticulum ATPase, putative - Theileria
annulata
Length = 905
Score = 48.8 bits (111), Expect = 2e-04
Identities = 27/69 (39%), Positives = 42/69 (60%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
+ EIC RA + AIR++IEAEI R+R ++ E+DPVP I+ HF+ A+K +R
Sbjct: 818 IAEICHRAAREAIRESIEAEIKRKRP---------LEKGEKDPVPYITNKHFQIALKNSR 868
Query: 635 RSVSDNDIR 609
++ + R
Sbjct: 869 YPITGSGPR 877
>UniRef50_A5KAB5 Cluster: Cell division cycle ATPase, putative; n=1;
Plasmodium vivax|Rep: Cell division cycle ATPase,
putative - Plasmodium vivax
Length = 1089
Score = 47.2 bits (107), Expect = 5e-04
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRE---RSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMK 645
+T +CQ A AI++ I R+ R D D DPVP +++ HF+ A K
Sbjct: 1004 ITNLCQSAVNEAIKETIRLVSQRKGGPEKRSGAKANGGAD-DHYDPVPTLAKKHFDLAFK 1062
Query: 644 FARRSVSDNDIRKYEMFAQTL 582
AR S+ D+ KYE F + L
Sbjct: 1063 NARISIRPEDVLKYERFKEKL 1083
>UniRef50_Q4YQQ6 Cluster: Cell division cycle ATPase, putative; n=3;
Plasmodium (Vinckeia)|Rep: Cell division cycle ATPase,
putative - Plasmodium berghei
Length = 932
Score = 44.4 bits (100), Expect = 0.003
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEA-EIHRERSRXXXXXXAVMD----MDEEDPVPEISRAHFEEA 651
+T +CQ A AI++ I + + +S ++ DPVP +S+ HF+ A
Sbjct: 844 ITNLCQSAVNEAIKETIYLINLKKGKSNKNDKKKKSRGGQNYLENYDPVPTLSKKHFDVA 903
Query: 650 MKFARRSVSDNDIRKYEMFAQTL 582
K AR S+ D+ KYE F + L
Sbjct: 904 FKNARISIQPEDVLKYEKFKEKL 926
>UniRef50_Q7QWL6 Cluster: GLP_762_31096_33708; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_762_31096_33708 - Giardia lamblia
ATCC 50803
Length = 870
Score = 41.9 bits (94), Expect = 0.019
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 20/105 (19%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDM--------------DEEDPVPE 678
L EIC RACK +IR+ +E R S + +D + E+ + E
Sbjct: 717 LAEICSRACKYSIRENVEG-FSRAMSAFESMKKSWLDSHGGVLTPEKEKEFAEHEEKISE 775
Query: 677 ------ISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFG 561
IS HFE+A++ +R+S+S+ ++R++E+F Q+ G G
Sbjct: 776 RFSDTSISGRHFEQAIRESRKSISEEEMRRFEVFKQSYSGGIGDG 820
>UniRef50_Q8TA24 Cluster: Putative transitional endoplasmic
reticulum ATPase; n=1; Heterodera glycines|Rep: Putative
transitional endoplasmic reticulum ATPase - Heterodera
glycines (Soybean cyst nematode worm)
Length = 89
Score = 40.3 bits (90), Expect = 0.057
Identities = 27/77 (35%), Positives = 35/77 (45%)
Frame = -3
Query: 599 MFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQPTFQEEGGDDDLYS*TVSRSRPRGI 420
MFAQTLQQ RGFGT+F+FP + DDDLYS +V+ I
Sbjct: 1 MFAQTLQQQRGFGTSFKFPGEGKKSSSGRGGN------EAGNDDDDLYSQSVNIDYSEVI 54
Query: 419 STISIDQN*RPVCLSCV 369
S+ C+ C+
Sbjct: 55 SSDDEQNMSLFNCIGCI 71
>UniRef50_Q6A846 Cluster: Putative ATP-dependent DNA helicase; n=1;
Propionibacterium acnes|Rep: Putative ATP-dependent DNA
helicase - Propionibacterium acnes
Length = 1061
Score = 36.3 bits (80), Expect = 0.92
Identities = 25/77 (32%), Positives = 38/77 (49%)
Frame = +3
Query: 306 LRHYRIREPAGARRHVGVVGRHAGQTDRTLVLVYRDGGDAPRSRARHSLAVQVVVTPLLL 485
LRH R+ + A R + VV RH G+ D ++ +G RSR H+L+ VT +L
Sbjct: 344 LRHARVADGV-AWRSMAVVTRHGGELDVIATILAAEGIPVLRSRDEHALSDIYAVTHILN 402
Query: 486 ERGLVAR*STRAPCSSR 536
+ ++ A SSR
Sbjct: 403 ALEMAVALASGAQLSSR 419
>UniRef50_A1SE84 Cluster: NADH:flavin oxidoreductase/NADH oxidase;
n=1; Nocardioides sp. JS614|Rep: NADH:flavin
oxidoreductase/NADH oxidase - Nocardioides sp. (strain
BAA-499 / JS614)
Length = 699
Score = 35.5 bits (78), Expect = 1.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 510 STRAPCSSRVCWESEVGSEAAALLQGLREHLVLADVVVGHGAARELHRL 656
S +P S W+ E G A++ + EH LA + + HG A + RL
Sbjct: 71 SDESPLHSSDIWDGEDGRRHKAMVDAVHEHGALASIELHHGGAHAMRRL 119
>UniRef50_Q00T93 Cluster: 26S proteasome regulatory complex, ATPase
RPT1; n=2; Ostreococcus|Rep: 26S proteasome regulatory
complex, ATPase RPT1 - Ostreococcus tauri
Length = 930
Score = 35.5 bits (78), Expect = 1.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -3
Query: 692 DPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRG 567
D P ++ AHFEEA + SVS D +Y+ + L++ RG
Sbjct: 848 DATPRVTAAHFEEAFTKVQPSVSKADHARYDELRRKLRRERG 889
>UniRef50_A0EEE7 Cluster: Chromosome undetermined scaffold_91, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_91,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 772
Score = 35.1 bits (77), Expect = 2.1
Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
+ +ICQ A K A+++ I+ +E ++ + + D P+I+R HFE +++ +
Sbjct: 668 IKQICQNAKKAALKE-IQMIDAQENAKGTSK-----NYQQLDSFPQITRQHFETSLQQTQ 721
Query: 635 RSVSDNDIRKYEMFAQTL-QQSRGFGTNFRF 546
+S + + I + + F ++L QQ + +F+F
Sbjct: 722 KSYTYHQISQIQGFQKSLVQQQKSNKADFKF 752
>UniRef50_Q803I9 Cluster: Nuclear VCP-like; n=4; Deuterostomia|Rep:
Nuclear VCP-like - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 796
Score = 34.3 bits (75), Expect = 3.7
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3
Query: 677 ISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 576
+SR HFE+A K R SVS D YE +TL +
Sbjct: 763 VSRVHFEDAFKKVRPSVSKKDQLMYERLRETLSR 796
>UniRef50_A4JRK0 Cluster: Transcriptional regulator, Fis family;
n=1; Burkholderia vietnamiensis G4|Rep: Transcriptional
regulator, Fis family - Burkholderia vietnamiensis
(strain G4 / LMG 22486) (Burkholderiacepacia (strain
R1808))
Length = 148
Score = 33.9 bits (74), Expect = 4.9
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 582 QGLREHLVLADVVVGHGAARELHRLLEV 665
Q L HLVLA + GHG R+L RL+E+
Sbjct: 27 QSLEYHLVLAAIRAGHGNERQLSRLVEI 54
>UniRef50_Q82QP8 Cluster: Putative uncharacterized protein; n=1;
Streptomyces avermitilis|Rep: Putative uncharacterized
protein - Streptomyces avermitilis
Length = 555
Score = 33.5 bits (73), Expect = 6.5
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 477 LLLERGLVAR*STRAPCSSRVCWESEVGSEAAALLQGLRE 596
LL ER L A RA + CWE+E + AAL +G R+
Sbjct: 395 LLAERSLAAYQQLRAAARAADCWETERAAALAALREGTRQ 434
>UniRef50_A5NV47 Cluster: LigA; n=1; Methylobacterium sp. 4-46|Rep:
LigA - Methylobacterium sp. 4-46
Length = 475
Score = 33.5 bits (73), Expect = 6.5
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 330 PAG--ARRHVGVVGRHAGQTDRTLVLVYRDGGDAPRSR 437
PAG RR G GRH G+ D+ V RD GD PR R
Sbjct: 359 PAGRAVRRCRGGGGRHGGRHDQHAVQPARDAGDPPRGR 396
>UniRef50_Q1ENB0 Cluster: Isopentenyl-diphosphate delta-isomerase II
precursor; n=1; Guillardia theta|Rep:
Isopentenyl-diphosphate delta-isomerase II precursor -
Guillardia theta (Cryptomonas phi)
Length = 215
Score = 33.5 bits (73), Expect = 6.5
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 612 DVVVGHGAARELHRLLEVSAANLRNGVFLVHVHNGSGGLLL 734
D V+GHG+ + H + +SA + F + + NG G LLL
Sbjct: 107 DEVLGHGSKKYCHLMENISAGKALHRAFSIFLFNGRGELLL 147
>UniRef50_O97230 Cluster: Putative uncharacterized protein MAL3P2.8;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein MAL3P2.8 - Plasmodium falciparum
(isolate 3D7)
Length = 1410
Score = 33.5 bits (73), Expect = 6.5
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = -2
Query: 240 NKRKEKNTKPARESDCASQSHKIHVSNVNLI 148
NKR+ KN +P+ ++ ++HKIH+S+ +I
Sbjct: 751 NKRQPKNMEPSTHNNTLCENHKIHISHQKII 781
>UniRef50_A7CRG4 Cluster: D-isomer specific 2-hydroxyacid
dehydrogenase NAD-binding; n=1; Opitutaceae bacterium
TAV2|Rep: D-isomer specific 2-hydroxyacid dehydrogenase
NAD-binding - Opitutaceae bacterium TAV2
Length = 321
Score = 33.1 bits (72), Expect = 8.6
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 537 VCWESEVGSEAAALLQGLREHLVLADVVVGHGAARELHRLLEVSAANLR-NGVFLV 701
VC +GS+ A L GL +++ D++ H A+E+ L +++AA + + +F+V
Sbjct: 151 VCGLGNIGSQVARLCHGLGMNVIGVDIIKTHPIAKEIFPLDQLAAAVAKADHIFIV 206
>UniRef50_Q4WYG4 Cluster: C6 transcription factor, putative; n=3;
Trichocomaceae|Rep: C6 transcription factor, putative -
Aspergillus fumigatus (Sartorya fumigata)
Length = 754
Score = 33.1 bits (72), Expect = 8.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 4 GNXYRGPGADTVSIAATRQHTI*TYEPLVRAIHYTNINN 120
G + PG + + A+ HTI +EPL AI Y+ IN+
Sbjct: 265 GTRTQSPGVEEAADASRPDHTIHAFEPLALAIFYSAINS 303
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 782,903,817
Number of Sequences: 1657284
Number of extensions: 15698345
Number of successful extensions: 54963
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 51525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54913
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70789333940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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