Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c19
         (817 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.72 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   6.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 547 NLKLVPKPRLCCRVCANISYLRMSLSDTERRANF 648
           N+KL   P  CC +C N + L  S  +  ++  F
Sbjct: 718 NMKLEKVPGECCAICVNATSLVESNRNVPQKCIF 751


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 807 DMPASLQAGHSPGHRGGDPSREESP 733
           D    L+ G  P H GG PS  + P
Sbjct: 51  DPSVGLRQGIPPHHYGGPPSGGQPP 75


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 408 DRPELTSCLFVLRVAPPHQHGAWPRPV 328
           D PE++  L  + V     HG W R V
Sbjct: 692 DVPEISKYLDFINVMTYDFHGQWERTV 718


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 408 DRPELTSCLFVLRVAPPHQHGAWPR 334
           D P L + L  + V     HGAW R
Sbjct: 818 DLPALGTVLDFMSVMTYDYHGAWER 842


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,499
Number of Sequences: 336
Number of extensions: 3410
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)